| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,240,612 – 4,240,708 |
| Length | 96 |
| Max. P | 0.909269 |
| Location | 4,240,612 – 4,240,708 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 96.04 |
| Shannon entropy | 0.06794 |
| G+C content | 0.48125 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -31.70 |
| Energy contribution | -31.50 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4240612 96 + 21146708 UUGGUUUUGGCAUUUAUUUUGCGCUUCUUUUGCGGCCAAAAUGCUCGAAAAGUUGGCUAGCUCCCCGAGAGAGGAGCGAGUCUCGCUUUUCGACUG ...((((((((..........(((.......)))))))))))..(((((((((.((((.(((((.(....).))))).))))..)))))))))... ( -37.10, z-score = -2.77, R) >droSim1.chr2R_random 1368144 96 + 2996586 UUGGUUUUGGCAUUUAUUUUGCGCUUCUUUUGCGGCCAAAAUGCUCGAAAAGUUGGCUAGCUCCCCGAGAGAGGAGCGAGUCUCGCUUUUCGACUG ...((((((((..........(((.......)))))))))))..(((((((((.((((.(((((.(....).))))).))))..)))))))))... ( -37.10, z-score = -2.77, R) >droSec1.super_1 1886654 96 + 14215200 UUGGUUUUGGCAUUUAUUUUGCGCUUCUUUUGCGGCCAAAAUGCUCGAAAAGUUGGCUAGCUUCCCGAGAGAGGAGCGAGUCGCGCUUUUCGACUG ...((((((((..........(((.......)))))))))))..((((((((((((((.(((((.(....).))))).))))).)))))))))... ( -34.80, z-score = -1.76, R) >droYak2.chr2L 16896206 96 + 22324452 UUGGUUUUGGCAUUUAUUUUGCGCUUCUUUUGUGGCCAAAAUGCUCGAAAAGUUGGCUAGGUCCCCGAGAGAGGAACGAGUCUCGCUUUUUGACUG ...((((((((..........(((.......)))))))))))..(((((((((.((((...(((.(....).)))...))))..)))))))))... ( -27.50, z-score = -0.82, R) >droEre2.scaffold_4929 8248741 96 - 26641161 UUGGUUUUGGCAUUUAUUUUGCGCUUCUUUUGCGGCCGAAAAGCUCGAAAAGUUGGCUAGGUUCCCGAGAGAGGAGCGAGUCUCGCUUUUUGACUG ....(((((((..........(((.......))))))))))((.(((((((((.((((..((((((....).))))).))))..))))))))))). ( -31.00, z-score = -0.76, R) >consensus UUGGUUUUGGCAUUUAUUUUGCGCUUCUUUUGCGGCCAAAAUGCUCGAAAAGUUGGCUAGCUCCCCGAGAGAGGAGCGAGUCUCGCUUUUCGACUG ...((((((((..........(((.......)))))))))))..(((((((((.((((.(((((.(....).))))).))))..)))))))))... (-31.70 = -31.50 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:44 2011