| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,331,032 – 2,331,135 |
| Length | 103 |
| Max. P | 0.784188 |
| Location | 2,331,032 – 2,331,135 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.88 |
| Shannon entropy | 0.40018 |
| G+C content | 0.51905 |
| Mean single sequence MFE | -31.26 |
| Consensus MFE | -21.90 |
| Energy contribution | -21.46 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2331032 103 - 23011544 UUCGUUUUGGGUUUGGGCCCACA------UGUGUGUGU-GUGUUAGGAGAGCAAGGUUAAGCUGUUGGUGAUUGCAGCUUGCG--UAGAGGAUUGCAGGCUCUUAGCCAAAU .....(((((.(..(((((((((------(......))-)))........((((...((((((((........))))))))(.--....)..)))).)))))..).))))). ( -30.80, z-score = -0.45, R) >droSim1.chr2L 2288489 95 - 22036055 --------GGGUUUGGGCACGCA------UGUGUGUGU-GUGUUAGGAGAGCAAGGUUAAGCUGUUGGUGAUUGCAGCUUGCG--GAGAGGAUUGCAGGCUCUUGGCCAAAU --------..(((((((((((((------(....))))-))))...((((((......(((((((........)))))))(((--(......))))..))))))..)))))) ( -33.80, z-score = -2.16, R) >droYak2.chr2L 2310491 100 - 22324452 --------GGGUUUGGCCACGCAUGUGUGUGUGUGUGU-GUGUUAGGGGAGCAAGGUUAAGCUGCUAGUGAUUGCAGUUUGCG--GAGAGGAUUGCAGGC-CUUGGUCAAAU --------...((((((((((((..(....)..)))))-).)))))).((.((((((((((((((........)))))))(((--(......)))).)))-)))).)).... ( -34.80, z-score = -2.21, R) >droEre2.scaffold_4929 2370044 93 - 26641161 --------GAGUUCGGGCACGCA--------UGUGUGU-GUGUUAGGAGAGCAAGGUUAAGCUGUUGGUGAUUGCAGUUUGCG--AGGAGGAUUGCAGCCUCUUGGCCAAAU --------..((((.((((((((--------....)))-)))))....))))......(((((((........)))))))((.--((((((.......)))))).))..... ( -31.30, z-score = -1.53, R) >droPer1.super_1 4730893 95 + 10282868 -------GGGGGGGGGGAGUGU-------UGUGUAUGUAGAGCAAGGAGAGCAAGGUUAAGCUGUUGGGGAUUGCAGCUUACACCGAGACGAUUGCGAA---UGUGCCUCGU -------((((.(.(...((((-------(((.(.......((.......))..(((((((((((........)))))))).))).).)))).)))...---).).)))).. ( -25.60, z-score = -0.51, R) >consensus ________GGGUUUGGGCACGCA______UGUGUGUGU_GUGUUAGGAGAGCAAGGUUAAGCUGUUGGUGAUUGCAGCUUGCG__GAGAGGAUUGCAGGCUCUUGGCCAAAU ..........(((((((((((((........)))))))....(((((((.((((...((((((((........))))))))(.....)....))))...))))))))))))) (-21.90 = -21.46 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:54 2011