| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,195,689 – 4,195,801 |
| Length | 112 |
| Max. P | 0.552358 |
| Location | 4,195,689 – 4,195,801 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.32800 |
| G+C content | 0.41762 |
| Mean single sequence MFE | -25.95 |
| Consensus MFE | -16.40 |
| Energy contribution | -17.48 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4195689 112 - 21146708 ------CCGCGACUUCUGCUCCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUGCAAGCUGCUGAUGCUGAUGUUUUGCACUGCUUUGCCCUGC ------..((((.....((...(((.((((((((((((........)))))((((.(((.((((((..........)))))).))))))))))))))....)))..)).))))..... ( -29.00, z-score = -2.10, R) >droSec1.super_1 1842426 112 - 14215200 ------CCGCGACUUCUGCUCCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUGCAAGCUGCUGAUGCUGAUGUUUUCCACUGCUUUGCCCUGC ------..((((.....((....)).((((((((((((........)))))((((.(((.((((((..........)))))).))))))))))))))............))))..... ( -25.60, z-score = -1.56, R) >droEre2.scaffold_4929 8204197 111 + 26641161 -------CGCGACUCCUGCUCCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUGCAAGCUGCUGAUGCUGAUGUUUUGCACUGCUUUGCCCUGC -------.((((.....((...(((.((((((((((((........)))))((((.(((.((((((..........)))))).))))))))))))))....)))..)).))))..... ( -29.00, z-score = -2.09, R) >dp4.chr3 2179726 108 - 19779522 ------CCCCUGCUUCUGCUUCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUGCAAGCUGCUGAUGCUGAUGUUUUGUGCUGUUUUGCC---- ------.....((..(.((.......((((((((((((........)))))((((.(((.((((((..........)))))).))))))))))))))......)).)....)).---- ( -24.82, z-score = -1.60, R) >droPer1.super_2 2350695 114 - 9036312 CCCCUGCUUCUGCUUCUGCUUCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUGCAAGCUGCUGAUGCUGAUGUUUUGUGCUGUUUUGCC---- .....((....((....))....)).((((((((((((........)))))((((.(((.((((((..........)))))).))))))))))))))......((......)).---- ( -26.10, z-score = -1.62, R) >droGri2.scaffold_15245 2529281 92 - 18325388 ------UGACGGCAGCUGUUGCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUUGGUGGCUCUG-UUUUGUUUUU------------------- ------.(((((.(((((..((((.....))))..).......(((((((.((.((((.....))))..)).)))))))..)))))))-))........------------------- ( -21.20, z-score = -1.08, R) >consensus ______CCGCGACUUCUGCUCCUGCUCAUCAGUUUCUUAUUUACAAAAGAAAUCAUGCAAUUUGCAUUUGUCUCUUUGCAAGCUGCUGAUGCUGAUGUUUUGCACUGCUUUGCC____ .................((....)).((((((((((((........)))))((((.(((.((((((..........)))))).))))))))))))))..................... (-16.40 = -17.48 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:38 2011