| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,187,905 – 4,188,015 |
| Length | 110 |
| Max. P | 0.828859 |
| Location | 4,187,905 – 4,188,015 |
|---|---|
| Length | 110 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.32 |
| Shannon entropy | 0.38663 |
| G+C content | 0.53608 |
| Mean single sequence MFE | -32.22 |
| Consensus MFE | -25.17 |
| Energy contribution | -25.06 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4187905 110 + 21146708 CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUCCC--CGGCGUUUCCGCUCACGUCUUCAAUACAUGCACACACUCGCAUACAU (((..(((((((((.((....(((((.((.((.(((((....))))).)).)).)))))..))--.)))))))))....)))..........((((........)))).... ( -33.20, z-score = -1.76, R) >droSim1.chr2R 2847858 110 + 19596830 CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUCCC--CGGCGUUUCCGCUCACGUCUUCAAUACAUGCACACACUCGCAUACAU (((..(((((((((.((....(((((.((.((.(((((....))))).)).)).)))))..))--.)))))))))....)))..........((((........)))).... ( -33.20, z-score = -1.76, R) >droSec1.super_1 1834537 110 + 14215200 CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUCCC--CGGCGUUUCCGCUCACGUCUUCAAUACUUGCACACACUCGCAUACAU (((..(((((((((.((....(((((.((.((.(((((....))))).)).)).)))))..))--.)))))))))....)))...........(((........)))..... ( -31.90, z-score = -1.39, R) >droYak2.chr2L 16843079 104 + 22324452 CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUCCC--CGGCGUUUCCGCUCACGUCUUCAAUACAUGCACA--CUCACAU---- (((..(((((((((.((....(((((.((.((.(((((....))))).)).)).)))))..))--.)))))))))....))).................--.......---- ( -30.20, z-score = -1.31, R) >droEre2.scaffold_4929 8196641 104 - 26641161 CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUCCC--CGGCGUUUCCGCUCACGUCUUUAAUACAUGCACA--CUCGCAU---- (((..(((((((((.((....(((((.((.((.(((((....))))).)).)).)))))..))--.)))))))))....)))..........((((...--...))))---- ( -32.70, z-score = -1.75, R) >droAna3.scaffold_13266 18079873 104 - 19884421 CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGUUCCC--CGUCGUUUCCGCUCAGAUCCCUUUUUCGUAUAUAUGUAUGU------ .....(((((((.(.((....(((((.((.((.(((((....))))).)).)).)))))..))--.).)))))))................(((((....))))).------ ( -25.70, z-score = -0.78, R) >dp4.chr3 2172171 108 + 19779522 CGUUAGGAAGUGGCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUGCCGCCGCUGCCACCGCUGCUGCCUCUCCGACGCUUCCGUCUACGUUU---- (((..(((((((...(((...(((((.(((.....(((.((((....))))..))).((.((....)).))....))))))))...)))..)))))))....)))...---- ( -36.70, z-score = -0.57, R) >droPer1.super_2 2341990 99 + 9036312 CGUUAGGAAGUGGCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUGCCGCCGCUGC---------UGCCUCUCCGACGCUUCCGUCUACGUUU---- (((..(((((((...(((...(((((.(((.....(((.((((....))))..))).((....)).)))))---------)))...)))..)))))))....)))...---- ( -34.20, z-score = -0.84, R) >consensus CGUUAGGAAGCGUCAGGACAUGCAGCCAGCUACUUGCACUCAUGUAGAUGACUUGCUGCUCCC__CGGCGUUUCCGCUCACGUCUUCAAUACAUGCACACACUCGCAU____ .....(((((((((.((....(((((.((.((.(((((....))))).)).)).)))))..))...)))))))))..................................... (-25.17 = -25.06 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:35 2011