| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,183,057 – 4,183,115 |
| Length | 58 |
| Max. P | 0.989648 |
| Location | 4,183,057 – 4,183,115 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 90.23 |
| Shannon entropy | 0.15712 |
| G+C content | 0.43004 |
| Mean single sequence MFE | -16.65 |
| Consensus MFE | -15.52 |
| Energy contribution | -15.65 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4183057 58 + 21146708 UUCGGUAUUCUGGAAUCUGGAUUCUGAUUCUGAAUUUUGGGUUCAGGUACUCGCAUAC ..((((((.(((((..(..(((((.......)))))..)..))))))))).))..... ( -13.70, z-score = -1.49, R) >droYak2.chr2L 16838310 52 + 22324452 UUCGGUAUUCUGGAAUCUGGAUU------CCGAAUUCUGGGUUCAGGUACUGGCAUAC .((((((((...(((((..((..------......))..))))).))))))))..... ( -16.60, z-score = -2.52, R) >droSec1.super_1 1829774 58 + 14215200 UUCGGUAUUCUCGAAUCUGGAUUCUGAUUCUGAAUUCUGGGUUCAGGUACUGGCAUAC .(((((((.((.(((((..(((((.......))).))..))))))))))))))..... ( -17.70, z-score = -2.92, R) >droSim1.chr2R 2841339 58 + 19596830 UUCGGUAUUCUCGAAUCUGGAUUCUGAUUCUGAAUUCUGGGUUCAGGUACUGACAUAC .(((((((.((.(((((..(((((.......))).))..))))))))))))))..... ( -18.60, z-score = -3.16, R) >consensus UUCGGUAUUCUCGAAUCUGGAUUCUGAUUCUGAAUUCUGGGUUCAGGUACUGGCAUAC .(((((((.((.(((((..(((((.......))).))..))))))))))))))..... (-15.52 = -15.65 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:34 2011