| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,158,598 – 4,158,699 |
| Length | 101 |
| Max. P | 0.584152 |
| Location | 4,158,598 – 4,158,699 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.49 |
| Shannon entropy | 0.45748 |
| G+C content | 0.46705 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -16.93 |
| Energy contribution | -17.11 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4158598 101 + 21146708 UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC-UGGUAACAGGAACCGG--CCAUGAAAAGGCCCCGAACACACGCAAAUUAGUGGGUU---- ..(((((((((..(......)..)))))))))....((((((.....-))))))....((((((--((.......)))).......(((........)))))))---- ( -32.40, z-score = -1.31, R) >droGri2.scaffold_15245 2490065 84 + 18325388 UUUGAUGUGGCUGUGACUUUGUGGCCAUAUCAUUAAUUGCCGCUAGC-------------AGCAGGACAUAAAAA-------GUAGCACACAAAUUAGUGUACA---- ..(((((((((..(......)..))))))))).....((((((....-------------.)).)).))......-------(((.(((........)))))).---- ( -22.90, z-score = -0.97, R) >droVir3.scaffold_12875 9171494 81 + 20611582 UUUGAUGUGGCUGUGACUUUGUGGCCAUAUCAUUAAUUGCCGCUAGC-------------UU---GGCAUAAAAA-------GUAGCACACAAAUUAGUGGACA---- ..(((((((((..(......)..))))))))).....(((((((((.-------------((---(.........-------........))).))))))).))---- ( -24.73, z-score = -1.84, R) >droAna3.scaffold_13266 18051355 102 - 19884421 UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC-CGGUAACAGGAACUAGAGGCAUAAAAAAUGCACAAA-ACACGCAAAUUAGUGGGGA---- ..(((((((((..(......)..)))))))))....((((((.....-))))))............((((.....)))).....-.(((........)))....---- ( -27.20, z-score = -0.95, R) >droWil1.scaffold_180701 537435 85 + 3904529 UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGCUAGG-------------CU---GCAAAAAAGA-------AACCCACACAAAUUAGUGGGCUAAAA ..(((((((((..(......)..)))))))))......(((....))-------------).---..........-------..(((((........)))))...... ( -27.70, z-score = -2.94, R) >droPer1.super_2 2310327 100 + 9036312 UUUGAUGCGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC-UGGCAAGAGGAACUAG--GCACGGCCAGCGUGC-AACACACACAAAUUAGUGGGCA---- ....(((((((((((.((..((..((.((....)).((((((.....-))))))..)).))..)--)))))))).))))((-....(((........))).)).---- ( -30.50, z-score = -0.05, R) >dp4.chr3 2139745 100 + 19779522 UUUGAUGCGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC-UGGCAAGAGGAACUAG--GCACGGCCAGCGUGC-AACACACACAAAUUAGUGGGCA---- ....(((((((((((.((..((..((.((....)).((((((.....-))))))..)).))..)--)))))))).))))((-....(((........))).)).---- ( -30.50, z-score = -0.05, R) >droSim1.chr2R_random 1312650 102 + 2996586 UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGCCUGGUAACAGGAACCGG--CCAUGAAAAGGCCCCGAACACACGCAAAUUAGUGGGUU---- ..(((((((((..(......)..)))))))))......((((((..((((....))))....((--((.......))))...))).(((........)))))).---- ( -34.30, z-score = -1.74, R) >droSec1.super_1 1805072 102 + 14215200 UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGCCCGGUAACAGGAACCGG--CCAUGAAAAGGCCCCGAACACACGCAAAUUAGUGGGUU---- ..(((((((((..(......)..)))))))))....((((((......))))))....((((((--((.......)))).......(((........)))))))---- ( -34.30, z-score = -1.64, R) >droYak2.chr2L 16810937 101 + 22324452 UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC-UGGUAACAGGAACCGG--GCAUGAAAACGGCCCGAACACACGCAAAUUAGUGGGUU---- ..(((((((((..(......)..)))))))))......((((((..(-((....)))....(((--((.((....)))))))))).(((........)))))).---- ( -33.50, z-score = -1.67, R) >droEre2.scaffold_4929 8167639 100 - 26641161 UUUGAUGUGGCUGUGAGUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC-UGGUAACAGGAACCGG--GCAUGAAAA-GCCCCCAACACACGCAAAUUAGUGGGCU---- ..(((((((((..(......)..)))))))))......((((((..(-((....))).....((--((.......-))))..))).(((........)))))).---- ( -33.40, z-score = -1.33, R) >consensus UUUGAUGUGGCUGUGACUCUGUGGCCAUAUCAUUAAUUGCCGUUAGC_UGGUAACAGGAACCGG__GCAUGAAAAGGCCCC_AACACACGCAAAUUAGUGGGCU____ ..(((((((((..(......)..)))))))))......................................................(((........)))........ (-16.93 = -17.11 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:33 2011