| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,328,783 – 2,328,883 |
| Length | 100 |
| Max. P | 0.899670 |
| Location | 2,328,783 – 2,328,883 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 69.62 |
| Shannon entropy | 0.55846 |
| G+C content | 0.45230 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -10.83 |
| Energy contribution | -11.72 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2328783 100 - 23011544 UGGCAAGUGGCAAGUUAAGCACCCAGCAUUGACUACCACAAUAGACAACAUUAAAGUU-GGUUUGCCAGCUUCGGCUUUCCCAUUUCCACUUUUCCACAUU----------------- ((((((((((..((((((((.....)).)))))).))))......((((......)))-)..))))))((....)).........................----------------- ( -26.80, z-score = -2.86, R) >droAna3.scaffold_12916 10049168 117 + 16180835 UGGCAAGUGGCAAGUUAAGCACCCAACAUUGACUACCACAAUAGACAACAUUAAAGUU-GGUUUGCCAGCUUUGCUUUGGCUUUGGCUUUGGUUUUCUCACUUCCACUAUCCCCCCUU (((.((((((.(((..((((..((((..(((.(((......))).)))...(((((((-((....)))))))))..)))).....))))....))).)))))))))............ ( -26.10, z-score = 0.36, R) >droYak2.chr2L 2308205 105 - 22324452 UGGCAAGUGGCAAGUUAAGCACCCAGCAUUGACUACCACAAUAGACAACAUUAAAGUU-GGUUUGCCAGCUUCGGCUUUCCCAUUUUCCCAUUUCCACUUUUCCGU------------ ((((((((((..((((((((.....)).)))))).))))......((((......)))-)..))))))((....))..............................------------ ( -26.80, z-score = -2.59, R) >droWil1.scaffold_180708 2305532 94 - 12563649 UAGAAAGUGGCAAGUUAAGCACCCAACAUUGACUACCACAAUAGACAACAUUAAAGUUGGGUUUGCCGGCCCCAGCUUGGCUUUGCCAACCAUU------------------------ .......((((((((((((((((((((.(((((((......)))......)))).))))))).....(....).))))))).))))))......------------------------ ( -26.80, z-score = -1.81, R) >droPer1.super_1 4727049 84 + 10282868 UGGCAAGUGGCAAGUUAAGCACCCAACAUUGACUGCCACAAUAGACCACAUUAAAGUU-GGUUUGCCAGCCAUGGGAUCUCCAUU--------------------------------- ((((..((((((.(((((..........)))))))))))..((((((((......).)-))))))...))))..((....))...--------------------------------- ( -26.30, z-score = -2.08, R) >droGri2.scaffold_15126 2296960 100 + 8399593 UAGCAAGUGGCAAGCUAAACACCCAACAUUGACUACCACAAUAGACAACAUUAAAGUU-GGCUUGCCCUCAUCGCACCCCUUUAAUAUCCUGCGAGACACC----------------- .....((.((((((((((..........(((.(((......))).)))........))-))))))))))..(((((..............)))))......----------------- ( -20.81, z-score = -2.53, R) >consensus UGGCAAGUGGCAAGUUAAGCACCCAACAUUGACUACCACAAUAGACAACAUUAAAGUU_GGUUUGCCAGCUUCGGCUUCCCCAUUUCCACUGUU__AC____________________ ((((((((((..((((((..........)))))).)))).......(((......)))....)))))).................................................. (-10.83 = -11.72 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:53 2011