| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,131,557 – 4,131,608 |
| Length | 51 |
| Max. P | 0.997818 |
| Location | 4,131,557 – 4,131,608 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 95.69 |
| Shannon entropy | 0.07566 |
| G+C content | 0.45490 |
| Mean single sequence MFE | -17.36 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.34 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.28 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.997818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4131557 51 + 21146708 GUUCGUCAAGUGACCUGAAAGUAGGUUAGCUUGAUGGGAUGCUGAUGCUUU .((((((((((((((((....))))))).)))))))))..((....))... ( -17.80, z-score = -3.47, R) >droSim1.chr2R 2770760 51 + 19596830 GUUCGUCAAGUGACCUGAAAGUAGGUUAGCUUGAUGGGAUGCUGAUGCUUU .((((((((((((((((....))))))).)))))))))..((....))... ( -17.80, z-score = -3.47, R) >droSec1.super_1 1778523 51 + 14215200 GUUCGUCAAGUGACCUGAAAGUAGGUUAGCUUGAUGCGAUGCUGAUGCUUU (((((((((((((((((....))))))).))))))).)))((....))... ( -15.90, z-score = -2.63, R) >droYak2.chr2L 16783279 51 + 22324452 GUUCGUCAAGUGACCUGAAUGUAGGUUAGCUUGAUGGGAUGCUGAAGCUUU .((((((((((((((((....))))))).)))))))))..((....))... ( -17.50, z-score = -3.34, R) >droEre2.scaffold_4929 8139306 51 - 26641161 GUUCGUCAAGUGACCUGAAUGUAGGUUAGCUUGAUGGGAUGCUGAUGCUGA .((((((((((((((((....))))))).)))))))))..((....))... ( -17.80, z-score = -3.52, R) >consensus GUUCGUCAAGUGACCUGAAAGUAGGUUAGCUUGAUGGGAUGCUGAUGCUUU .((((((((((((((((....))))))).)))))))))..((....))... (-17.14 = -17.34 + 0.20)
| Location | 4,131,557 – 4,131,608 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 95.69 |
| Shannon entropy | 0.07566 |
| G+C content | 0.45490 |
| Mean single sequence MFE | -8.92 |
| Consensus MFE | -8.54 |
| Energy contribution | -8.54 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.973154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4131557 51 - 21146708 AAAGCAUCAGCAUCCCAUCAAGCUAACCUACUUUCAGGUCACUUGACGAAC ...((....))......(((((...((((......))))..)))))..... ( -8.50, z-score = -2.02, R) >droSim1.chr2R 2770760 51 - 19596830 AAAGCAUCAGCAUCCCAUCAAGCUAACCUACUUUCAGGUCACUUGACGAAC ...((....))......(((((...((((......))))..)))))..... ( -8.50, z-score = -2.02, R) >droSec1.super_1 1778523 51 - 14215200 AAAGCAUCAGCAUCGCAUCAAGCUAACCUACUUUCAGGUCACUUGACGAAC ...((....)).(((..(((((...((((......))))..)))))))).. ( -10.30, z-score = -2.37, R) >droYak2.chr2L 16783279 51 - 22324452 AAAGCUUCAGCAUCCCAUCAAGCUAACCUACAUUCAGGUCACUUGACGAAC ...((....))......(((((...((((......))))..)))))..... ( -8.70, z-score = -2.12, R) >droEre2.scaffold_4929 8139306 51 + 26641161 UCAGCAUCAGCAUCCCAUCAAGCUAACCUACAUUCAGGUCACUUGACGAAC ((.((....))......(((((...((((......))))..))))).)).. ( -8.60, z-score = -2.32, R) >consensus AAAGCAUCAGCAUCCCAUCAAGCUAACCUACUUUCAGGUCACUUGACGAAC ...((....))......(((((...((((......))))..)))))..... ( -8.54 = -8.54 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:28 2011