| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,119,460 – 4,119,572 |
| Length | 112 |
| Max. P | 0.725668 |
| Location | 4,119,460 – 4,119,572 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.08 |
| Shannon entropy | 0.34989 |
| G+C content | 0.40370 |
| Mean single sequence MFE | -26.29 |
| Consensus MFE | -12.21 |
| Energy contribution | -12.25 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.725668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4119460 112 - 21146708 --------AAAUUAAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGAUUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAU --------......((((((((......((((...................))))..)))))))).((((((((((..(((((((((....)))))))))....)))).))).))).... ( -30.71, z-score = -3.89, R) >droSim1.chr2R_random 1281623 112 - 2996586 --------AAAUUUAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAU --------.........(((((......((((...................))))..)))))....((((((((((..(((((((((....)))))))))....)))).))).))).... ( -28.21, z-score = -3.17, R) >droSec1.super_1 1766420 112 - 14215200 --------AAAUUAAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAACGGCUAUAGCGACAGCUAUGGCUCCAAUGGACGCAUGUCCAAU --------.((((((.((((((.................)))))).))))))..............((((((((((..(((((((((....)))))))))....)))).))).))).... ( -30.03, z-score = -3.87, R) >droYak2.chr2L 16771238 112 - 22324452 --------AAAUUAAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAACGGCUACAGCGAUAGCUAUGGCUCCAGUGGACGCAUGUCCAAU --------.((((((.((((((.................)))))).))))))..............((((((((((..(((((.(((....))).)))))....)))).))).))).... ( -27.03, z-score = -2.34, R) >droEre2.scaffold_4929 8127264 112 + 26641161 --------AAAUUAAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCGGACGACGACUUCGACUGCUCCAACGGCUACAGCGAUAGCUAUGGCUCCAAUGGACGCAUGUCCAAU --------.((((((.((((((.................)))))).)))))).(((((.((....))..(((((((..(((((.(((....))).)))))....)))).))))))))... ( -29.93, z-score = -3.60, R) >droAna3.scaffold_13266 18014635 112 + 19884421 --------AAAUUAAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGAUGACUUCGACUGCUCCAAUGGAUAUAGCGAUAGCUAUGGAAGCAACGGUCGUCUGGCCAAU --------.((((((.((((((.................)))))).))))))(((..(((((((.....(((((((.......((((....))))))).))))..))))))))))..... ( -23.84, z-score = -1.20, R) >droPer1.super_2 2278604 120 - 9036312 AAAAAAAAAAAAUAAAACAAGAUCAAAAUGGAUUACAAACACGAUCUCAAUUCGGACGACGACUUCGACUGCUCGAAUGGAUAUAGCGACAGCUAUGGCAGCAACGGACGCAUGUCCAAU ...................(((((....((.....)).....)))))......(((((.((..((((.((((((.....))((((((....))))))))))...))))))..)))))... ( -22.10, z-score = -1.31, R) >dp4.chr3 2108140 118 - 19779522 --GAAAAAAAAAUAAAACAAGAUCAAAAUGGAUUACAAACACGAUCUCAAUUCGGACGACGACUUCGACUGCUCGAAUGGAUAUAGCGACAGCUAUGGCAGCAACGGACGCAUGUCCAAU --.................(((((....((.....)).....)))))......(((((.((..((((.((((((.....))((((((....))))))))))...))))))..)))))... ( -22.10, z-score = -1.06, R) >droWil1.scaffold_180701 485151 108 - 3904529 --------AAAUACAAAUCA----AAAAUGGAUUACAAACACGAUCUGAAUUCGGAUGAUGAUUUCGAUUGCUCAAAUGGUUAUAGCGACAGCUAUAAUAACAAUGGACGUAUGGCCAAU --------............----....(((..(((...((..(((((....)))))..))...((.(((((......)((((((((....))))))))..)))).)).)))...))).. ( -21.80, z-score = -1.69, R) >droMoj3.scaffold_6496 8835673 107 + 26866924 -------------UCAACUAAACAGAAAUGGAUUACAAAAACGAUCUUAACUCUGACGACGACUUCGACUGCUCCAAUGGCUACAGCGACAGCUUUGGCAGCAAUGGGCGCAUGUCCAAU -------------.........((((...(((((........)))))....))))...........((((((((((.((((((.(((....))).))))..)).)))).))).))).... ( -25.60, z-score = -1.92, R) >droGri2.scaffold_15245 2452081 111 - 18325388 ---------AAAUUAAAUUAUACCAAAAUGGAUUACAAACACGAUCUAAACUCGGAUGAUGAUUUCGACUGCUCCAAUGGUUAUAGCGAUAGCUAUGGCAGCAAUGGACGCAUGUCCAAC ---------.....(((((((.((....((((((........)))))).....))...))))))).((((((((((.((((((((((....))))))))..)).)))).))).))).... ( -27.80, z-score = -2.85, R) >consensus ________AAAUUAAAAUCGUUACAAAAUGGAUUACAAAAACGAUAUUAAUUCCGACGACGACUUCGACUGCUCCAAUGGCUAUAGCGACAGCUAUGGCACCAAUGGACGCAUGUCCAAU ............................(((((.......................(((.....)))..(((((.....((((.(((....))).)))).......)).))).))))).. (-12.21 = -12.25 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:26 2011