| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,100,010 – 4,100,117 |
| Length | 107 |
| Max. P | 0.509774 |
| Location | 4,100,010 – 4,100,117 |
|---|---|
| Length | 107 |
| Sequences | 13 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.63 |
| Shannon entropy | 0.57373 |
| G+C content | 0.52531 |
| Mean single sequence MFE | -38.31 |
| Consensus MFE | -12.14 |
| Energy contribution | -12.14 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.74 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4100010 107 + 21146708 ----ACAAAGGAGCUUUACUGGUGCGAUAUCCGACUGAGCACCAUUGAGCUCAUGAGGCUGGAUGGCACCGGUAGGGAGGUGCUAUUCAAGUCGGACCAGUUUCAUCCGUA------ ----.....(((.....((((((.((((..((...(((((........)))))...)).(((((((((((........))))))))))).)))).))))))....)))...------ ( -45.30, z-score = -3.77, R) >droSim1.chr2R_random 1226172 107 + 2996586 ----ACAAAGGAGCUUUACUGGUGCGAUAUCCGACUGAGCACCAUUGAGCUCAUGAAGCUGGAUGGCACCGGGAGGGAGGUGCUAUUCAAGUCGGAUCAGUUUCAUCCGUA------ ----.....(((.....((((.......((((((((((((........)))).......(((((((((((........)))))))))))))))))))))))....)))...------ ( -40.81, z-score = -2.68, R) >droSec1.super_1 1743167 107 + 14215200 ----ACAAAGGAGCUUUACUGGUGCGAUAUUCGACUGAGCACAAUUGAGCUCAUGAGGCUGGAUGGCACCGGGAGGGAGGUGCUAUUCAAGUCGGACCAGUUUCAUCCGUA------ ----.....(((.....((((((.((((.((((..(((((........)))))))))..(((((((((((........))))))))))).)))).))))))....)))...------ ( -44.30, z-score = -4.09, R) >droYak2.chr2L 16751944 107 + 22324452 ----ACAAAGGAGCUUUACUGGUGCGAUAUCCGACUGAGCACCAUAGAGCUCAUGAAGCUGGAUGGCACUGGCAGGGAGGUGCUAUUCAAGUCGGACCAGUUCCAUCCGUA------ ----.....(((.....((((((.((((.......(((((........)))))......(((((((((((........))))))))))).)))).))))))....)))...------ ( -40.70, z-score = -2.45, R) >droEre2.scaffold_4929 8106761 107 - 26641161 ----ACAAAGGAGCUUUACUGGUGCGAUAUCCGACUGAGCACCAUUGAGCUCAUGAAGCUGGAUGGCACCGGGAGGGAGGUGCUAUUCAAGUCGGACCAGUUUCAUCCGUA------ ----.....(((.....((((((.((((.......(((((........)))))......(((((((((((........))))))))))).)))).))))))....)))...------ ( -43.30, z-score = -3.32, R) >droAna3.scaffold_13266 17994446 107 - 19884421 ----UCCAAGCGGCUGUACUGGUGCGACGUCGGCCUGGGCACCAUCGAGCACAUGAAGCUGGAUGGCACUGGCCGGGAGGUGCUCUUCAAAUCGAACCAGUUCCGCAUCUU------ ----.....((((....((((((.(((..((((((.((...(((((.(((.......))).)))))..))))))))((((....))))...))).)))))).)))).....------ ( -45.60, z-score = -2.09, R) >dp4.chr3 2087585 107 + 19779522 ----GCGAAGAGGAUCUAUUGGUGCGACUCGCUGCGUGGCACUAUUGAGCGGAUGCGACUGGAUGGCACCGGACGGGAGGUGCUGCUAAAGUCGGACCAAUUCCAUCCGUA------ ----.......((((..((((((.(((((((((.(((..((....)).))).).)))).(((.(((((((........))))))))))..)))).))))))...))))...------ ( -39.70, z-score = -1.26, R) >droPer1.super_2 2258207 107 + 9036312 ----ACGAAGAGGAUCUAUUGGUGCGACUCGCUGCGUGGCACUAUUGAGCGGAUGCGACUGGAUGGCACCGGACGGGAAGUGCUGCUAAAGUCGGACCAAUUCCAUCCGUA------ ----.......((((..((((((.(((((......(..(((((.(((..(((.(((.(.....).))))))..)))..)))))..)...))))).))))))...))))...------ ( -38.40, z-score = -1.39, R) >droWil1.scaffold_180701 460396 107 + 3904529 ----ACAAAAAGAAUCUAUUGGUGUGAUUUUCAUUUGGGUACCAUUGAGCGCAUCAAAUUAGAUGGUACUGGUCGAGAGAUACUCUUCAAAUCGGAACAAUUUCAACCAUA------ ----...............((((.(((.((((((((((((((((((...............))))))))).(((....)))......))))).)))).....)))))))..------ ( -21.66, z-score = -0.31, R) >droVir3.scaffold_12875 9106905 107 + 20611582 ----ACCAAGCGGAUCUAUUGGUGCGACUCUAAGCUGGGCACCAUCGAGCGCAUUAAAUUGGAUGGCACUGGACGGGAGCUGCUUUUCAAAUCGGAGCAGUUUCAUCCGUU------ ----....(((((((...(..((((.(.(((((..((.((........)).)).....)))))).))))..)...(((((((((((.......))))))))))))))))))------ ( -36.30, z-score = -1.67, R) >droMoj3.scaffold_6496 8812105 107 - 26866924 ----GCCAAACGCAUCUAUUGGUGUGACUUCAGGCUGGGCACCAUCGAGCGCAUGAAGCUGGAUGGCACUGGCCGAGAGCUGCUCUUGAAAUCGGAGCAGCUCCAUCCGUU------ ----......((((((....))))))......(((..(...(((((.(((.......))).)))))..)..)))(.((((((((((.......))))))))))).......------ ( -48.00, z-score = -3.15, R) >droGri2.scaffold_15245 2431884 107 + 18325388 ----ACCAAACGCAUCUAUUGGUGCGAUUUCAAGCUGGGCACCAUCGAACGCAUGAAGUUGGACGGCACAGGACGAGAGCUGCUCUUCAAGUCGGAACAGUUUCAUCCGUU------ ----.(((..((((((....))))))((((((.((.(..(......)..))).)))))))))........(((.((((.(((.(((.......))).))))))).)))...------ ( -29.00, z-score = 0.09, R) >anoGam1.chr3L 799843 117 - 41284009 GAUCCAGAAGCGGCUAUACUGGUGCGACGCACGGCUUAGUUUCAUCGAAAGCAUCAACCUAGACGGAAGCAACCGAGUGCUGCUCUUCGACGGACGUUCACAGAAUCAAUUCCCCGU ..(((.(((((((((......((((...))))))))..))))).((((((((.....((.....)).((((......))))))).))))).)))....................... ( -24.90, z-score = 1.87, R) >consensus ____ACAAAGCGGCUCUACUGGUGCGAUUUCCGGCUGGGCACCAUUGAGCGCAUGAAGCUGGAUGGCACCGGACGGGAGGUGCUAUUCAAGUCGGACCAGUUUCAUCCGUA______ ...................((((((.............))))))...............(((((((..((.....)).(((.(..........).)))....)))))))........ (-12.14 = -12.14 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:25 2011