| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,093,588 – 4,093,674 |
| Length | 86 |
| Max. P | 0.805620 |
| Location | 4,093,588 – 4,093,674 |
|---|---|
| Length | 86 |
| Sequences | 4 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 89.86 |
| Shannon entropy | 0.15313 |
| G+C content | 0.53847 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.64 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4093588 86 + 21146708 AACAGCAUCGGGCUUUUUCGUUGGGUGGUGGGUGGUGGGUGAUGGUGUUUGGCAAGGUGGCGUUAACACGUCGCCACUCUGCAUAU ..((.((((.(((......))).)))).)).(..(.((((((((.((((..((......))...))))))))))).).)..).... ( -28.90, z-score = -1.41, R) >droSim1.chr2R 2757947 75 + 19596830 AAGAGCAUCGGGCUUUUUC-------GGUGGGUGGUGA----UGUUGUUUGGCAAGGUGGCGUUAACACGUCGCCACUCUGCAUAU ....((((((((....)))-------)))(((((((((----(((.(((..((......))...))))))))))))))).)).... ( -27.00, z-score = -2.36, R) >droSec1.super_1 1736746 75 + 14215200 AACAGCAUCGGGCUUUUUC-------GGUGGGUGGUGA----UGGUGUUUGGCAAGGUGGCGUUAACACGUCGCCACUCUGCAUAU ....((((((((....)))-------)))(((((((((----((.((((..((......))...))))))))))))))).)).... ( -27.00, z-score = -2.15, R) >droYak2.chr2L 16745553 74 + 22324452 AACAGCAUCGGGCUUUUC--------GGUGGGUGGUGG----UGGUGUUUGGCAAGGUGGCGUUAACACGUCGCCACUCUGCAUAU ((((.(((((.((((...--------...))))..)))----)).))))..(((..((((((.........))))))..))).... ( -25.50, z-score = -1.47, R) >consensus AACAGCAUCGGGCUUUUUC_______GGUGGGUGGUGA____UGGUGUUUGGCAAGGUGGCGUUAACACGUCGCCACUCUGCAUAU ..((.((((.(.(.............).).)))).))..............(((..((((((.........))))))..))).... (-21.40 = -21.64 + 0.25)
| Location | 4,093,588 – 4,093,674 |
|---|---|
| Length | 86 |
| Sequences | 4 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 89.86 |
| Shannon entropy | 0.15313 |
| G+C content | 0.53847 |
| Mean single sequence MFE | -16.14 |
| Consensus MFE | -14.95 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4093588 86 - 21146708 AUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCAUCACCCACCACCCACCACCCAACGAAAAAGCCCGAUGCUGUU ....((((.((((((.........)))))).))))..((((.((((...............................)))).)))) ( -17.18, z-score = -1.67, R) >droSim1.chr2R 2757947 75 - 19596830 AUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACAACA----UCACCACCCACC-------GAAAAAGCCCGAUGCUCUU ....((((.((((((.........)))))).)))).......((----((..........-------..........))))..... ( -14.65, z-score = -1.13, R) >droSec1.super_1 1736746 75 - 14215200 AUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCA----UCACCACCCACC-------GAAAAAGCCCGAUGCUGUU ....((((.((((((.........)))))).))))..((((.((----((..........-------..........)))).)))) ( -17.65, z-score = -1.87, R) >droYak2.chr2L 16745553 74 - 22324452 AUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCA----CCACCACCCACC--------GAAAAGCCCGAUGCUGUU ....((((.((((((.........)))))).)))).........----............--------....(((.....)))... ( -15.10, z-score = -0.91, R) >consensus AUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCA____CCACCACCCACC_______GAAAAAGCCCGAUGCUGUU ....((((.((((((.........)))))).)))).....................................(((.....)))... (-14.95 = -14.95 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:24 2011