| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,087,630 – 4,087,685 |
| Length | 55 |
| Max. P | 0.899597 |
| Location | 4,087,630 – 4,087,685 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 92.10 |
| Shannon entropy | 0.13381 |
| G+C content | 0.40078 |
| Mean single sequence MFE | -14.71 |
| Consensus MFE | -12.55 |
| Energy contribution | -12.55 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4087630 55 + 21146708 UUCAGGUAGCCACUAA-CUGAUGUGCAUAUGCACUUCAGAUGUCUAGUAUCGCACU ....(((.((.((((.-((((.((((....)))).)))).....))))...))))) ( -12.70, z-score = -0.60, R) >droEre2.scaffold_4929 8093955 55 - 26641161 UUCAGGUAGCUUCUAA-CUGAUGUGCAAGUGCACUUCAGAUGUCUAAUAUCGUAAU ....((((........-((((.((((....)))).))))........))))..... ( -12.89, z-score = -1.51, R) >droYak2.chr2L 16739286 55 + 22324452 UUCAGGUAGCCUCUAA-CUGAUGUGCAAGUGCACUUCAGAUGUCUAAUAUCGUAAU ....((((........-((((.((((....)))).))))........))))..... ( -12.89, z-score = -1.55, R) >droSec1.super_1 1730795 56 + 14215200 UUCAGGUAGCCUCUAAGCUGAAGUGCAAAUGCACUUCAGAUGUCUAAUAUCGUAAU ....((((.........(((((((((....)))))))))........))))..... ( -17.53, z-score = -3.67, R) >droSim1.chr2R 2751167 56 + 19596830 UUCAGGUAGCCUCUAAGCUGAAGUGCAUAUGCACUUCAGAUGUCUAAUAUCGUAAU ....((((.........(((((((((....)))))))))........))))..... ( -17.53, z-score = -3.34, R) >consensus UUCAGGUAGCCUCUAA_CUGAUGUGCAAAUGCACUUCAGAUGUCUAAUAUCGUAAU ....((((.........((((.((((....)))).))))........))))..... (-12.55 = -12.55 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:23 2011