| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,031,958 – 4,032,037 |
| Length | 79 |
| Max. P | 0.756256 |
| Location | 4,031,958 – 4,032,037 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 75.30 |
| Shannon entropy | 0.41690 |
| G+C content | 0.31299 |
| Mean single sequence MFE | -12.22 |
| Consensus MFE | -7.54 |
| Energy contribution | -9.38 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4031958 79 - 21146708 AUGAAUUCUAUACGCAAUAUCGCUACAAAUCAGAUGUUUAGAAAACAAUUUCACGUAUAAUCUGACGUCUAAUGAUAAG .................(((((.((.(..((((((.....((((....)))).......))))))..).)).))))).. ( -9.10, z-score = 0.10, R) >droSim1.chr2R_random 1177815 64 - 2996586 ---------------AAUAUCGCUACAAAUCAGAUGUUUAGGAAACAAUUUCACGUUUAAUCCGACGUUUAGUGAUAAG ---------------..((((((((...............(....)......(((((......))))).)))))))).. ( -12.70, z-score = -2.22, R) >droSec1.super_1 1669854 64 - 14215200 ---------------AAUAUCGCUACAAAUCAGAUGUUUAGGAAAAAAUUUCACGUUUAAUCCGACGUCUAGUGAUAAG ---------------..(((((((.......(((((((..(((..((((.....))))..))))))))))))))))).. ( -13.91, z-score = -2.76, R) >droYak2.chr2L 16682110 69 - 22324452 ----AUAUUAUACAAAAUAUCGCUACAAAUGAGAUGUUUAGGAAACUAUUUCACGUGUAAUCUG------AGUGAUAAG ----.............(((((((.((.((.(.((((.(((....)))....)))).).)).))------))))))).. ( -14.40, z-score = -2.35, R) >droEre2.scaffold_4929 8038663 73 + 26641161 AUAUAUUCUAUACAAAAUGUCGCGACGAAUCAGAUGUUUAGGAAACAAAUUCACGUAUAAUCUG------AGUGAUAAG .................((((((......((((((.....((((.....))).).....)))))------))))))).. ( -11.00, z-score = -0.31, R) >consensus ____AU__UAUAC__AAUAUCGCUACAAAUCAGAUGUUUAGGAAACAAUUUCACGUAUAAUCUGACGU_UAGUGAUAAG .................((((((((....((((((.....((((.....))).).....))))))....)))))))).. ( -7.54 = -9.38 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:19 2011