| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,030,850 – 4,030,953 |
| Length | 103 |
| Max. P | 0.983211 |
| Location | 4,030,850 – 4,030,953 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 69.17 |
| Shannon entropy | 0.50856 |
| G+C content | 0.61230 |
| Mean single sequence MFE | -28.66 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4030850 103 + 21146708 CCGCCGGCAACAU-CCCCUCUCCCUCUCCGACUCCAUCAACCACACCUACAUCCAUUCACCAACAC----CAGCAACACUGAAAUGUUGCCAAACGGCGGACGUGACG (((((((((((((-...............((.....))............................----(((.....)))..))))))))....)))))........ ( -20.30, z-score = -2.76, R) >droSec1.super_1 1668780 89 + 14215200 CCGCCGGCAACAU-CCCUCCUCCCUCCCU-----------CCGCGC---CAUCCAUUCACCAACAC----CAGCAACACUGAAAUGUUGCCAAACGGCGGACGUGACG ((((((((.....-...............-----------....))---)................----..((((((......)))))).....)))))........ ( -20.06, z-score = -1.79, R) >droYak2.chr2L 16680102 108 + 22324452 CCGCCGGCAACAUGCCCCUUUCCCCCCCACAGCAACAUGGUUGUGGUUGUGUCACCUCGGCAACACGACGUACUCACGCUGAAAUGUUGCCAAACGGCGGACGUGACG (((((((((((((.............(((((((......)))))))..(((..((.(((......))).))...)))......))))))))....)))))........ ( -37.20, z-score = -1.16, R) >droEre2.scaffold_4929 8037190 99 - 26641161 CCGCCGGCAACAU-CCCCUCCCCUUCCCCCAGCAACUCGG--------AUGGCACCGCGGCAACACGGCGUACUCACGCUGAAAUGUUGCCAAACGGCGGACGUGACG ((((((((..(((-((......((......))......))--------))).....))(((((((((((((....))))))...)))))))...))))))........ ( -37.10, z-score = -2.30, R) >consensus CCGCCGGCAACAU_CCCCUCUCCCUCCCCCAGCAACUCGGCCGCGC__ACAUCAACUCACCAACAC____CACCAACACUGAAAUGUUGCCAAACGGCGGACGUGACG (((((((((((((......................................................................))))))))....)))))........ (-16.75 = -16.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:18 2011