| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,024,409 – 4,024,469 |
| Length | 60 |
| Max. P | 0.894065 |
| Location | 4,024,409 – 4,024,469 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 59.25 |
| Shannon entropy | 0.61984 |
| G+C content | 0.48848 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -9.83 |
| Energy contribution | -8.11 |
| Covariance contribution | -1.72 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4024409 60 - 21146708 ------------CAAUUCUCUGUUUGUGUCUGGAAACCACCU--GCACCUGCCUGGCGUCUGGCAUACGAAUUA--- ------------.........(((((((((..((..(((...--((....)).)))..))..).))))))))..--- ( -15.60, z-score = -1.78, R) >droPer1.super_4 5469302 77 + 7162766 UAUUCCUGUUUCUAGGUCUGGGUCUGGGUCUGGUACGUUUCCAGAGAAAAGACAGACACCUGAUCUACAGCUGAUUA .....((((....(((((.(((((((..(((((.......))))).......))))).)).)))))))))....... ( -22.10, z-score = -0.57, R) >dp4.chr3 11996258 77 + 19779522 UAUUCCUGUUUCUAGGUCUGGGUCUGGGUCUGGUACCUUUCCAGAGAAAAGACAGACACCUGAUCUACAGCUGAUUU .....((((....(((((.(((((((..(((((.......))))).......))))).)).)))))))))....... ( -22.10, z-score = -0.40, R) >droSec1.super_1 1662356 60 - 14215200 ------------CAAUUCUCUGUUUGUGUCUGGAAACCACCU--GCACCUGCCUGGCGUCUGGCAGACGAAUUA--- ------------.(((((.......((((..((......)).--))))(((((........)))))..))))).--- ( -15.90, z-score = -1.27, R) >droSim1.chr2R 2717964 60 - 19596830 ------------CAAUUCUCUGUUUGUGUCUGGAAACCACCU--GCACCUGCCUGGCGUCUGGCAGACGAAUUA--- ------------.(((((.......((((..((......)).--))))(((((........)))))..))))).--- ( -15.90, z-score = -1.27, R) >consensus ____________CAAUUCUCUGUUUGUGUCUGGAAACCACCU__GCACCUGCCUGGCGUCUGGCAUACGAAUUA___ .............(((((((((((...(((.(....................).)))....)))))).))))).... ( -9.83 = -8.11 + -1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:18 2011