| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,322,884 – 2,322,976 |
| Length | 92 |
| Max. P | 0.781297 |
| Location | 2,322,884 – 2,322,976 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 84.71 |
| Shannon entropy | 0.29982 |
| G+C content | 0.44255 |
| Mean single sequence MFE | -17.22 |
| Consensus MFE | -11.76 |
| Energy contribution | -12.82 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2322884 92 - 23011544 UUUACACAUCUAAUCCAUAAUGCCGCCAUGUGGAUUCCCAUGCCAUUUCGCUUCGUCCGAUGGCCAGAUGUACACUACAUUUUCCCAUUACC .....((((((((((((((.((....)))))))))).....((((((.((...))...)))))).))))))..................... ( -18.80, z-score = -2.26, R) >droSim1.chr2L 2280303 92 - 22036055 UUUACACAUCUAAUCCAUAAUGCCGCCAUGUGGAUUCCCAUGCCAUUUCGCUCCGUCCGAUGGCCAGAUGUACACUACAUUUUCCCAUUACC .....((((((((((((((.((....)))))))))).....((((((.((...))...)))))).))))))..................... ( -18.80, z-score = -2.31, R) >droSec1.super_5 493897 92 - 5866729 UUUACACAUCUAAUCCAUAAUGCCGCCAUGUGGAUUCCCAUGCCAUUUCGCUCCGUCCGAUGGCCAGAUGUACACUACAUUUUCCCAUUACC .....((((((((((((((.((....)))))))))).....((((((.((...))...)))))).))))))..................... ( -18.80, z-score = -2.31, R) >droYak2.chr2L 2302199 92 - 22324452 UUUACACAUCUAAUCCAUAAUGCCGCCAUGUGGAUUGCCAUUCCAUUUCGCUCCGUCUGAUGGCCAGAUGUACACUACAUUUUCCCAUUACC .....((((((((((((((.((....))))))))))((((((..((........))..)))))).))))))..................... ( -18.80, z-score = -2.13, R) >droEre2.scaffold_4929 2357227 92 - 26641161 UUUACACAUCUAAUCCAUAAUGCCGCCAUGUGGAUACCCAUCCUAUUUCACUCCGUCUGAUGGCCAGAUGUACACUACAUUUUCCCAUUACC .....((((((.(((((((.((....)))))))))..(((((..((........))..)))))..))))))..................... ( -16.30, z-score = -2.04, R) >droAna3.scaffold_12916 10042202 73 + 16180835 --UUCUGAACUAAUCCAUAAUGCCGCCAUGUGGCUUUCCAUUUCAUUUCCUU---UUCUAUGGGUUGAUG-ACAUUACA------------- --...............(((((..(((....)))........(((((.(((.---......)))..))))-))))))..------------- ( -11.80, z-score = -0.42, R) >consensus UUUACACAUCUAAUCCAUAAUGCCGCCAUGUGGAUUCCCAUGCCAUUUCGCUCCGUCCGAUGGCCAGAUGUACACUACAUUUUCCCAUUACC .....((((((((((((((.((....)))))))))).....((((((...........)))))).))))))..................... (-11.76 = -12.82 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:53 2011