| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,010,231 – 4,010,322 |
| Length | 91 |
| Max. P | 0.666199 |
| Location | 4,010,231 – 4,010,322 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 74.45 |
| Shannon entropy | 0.47154 |
| G+C content | 0.50405 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -13.80 |
| Energy contribution | -16.37 |
| Covariance contribution | 2.58 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4010231 91 + 21146708 GCGUUUUUGGUACUGCUCGUACUACUCGAGAUGCACAAUUAACUUUGUCUCUGGGCGAGGGAAGUGCGCAGUACCCGGAAUCGCGGCAAUC ((((((..(((((((((((.......)))...((((......(((((((....)))))))...))))))))))))..))).)))....... ( -34.30, z-score = -2.83, R) >droPer1.super_4 5454118 74 - 7162766 ----UUUUGGUACUAUGGGCAGCG-----GCAGCGCAAUUAGCGUUG------GAAUAGAGAAAUGCGCAGUGCAUU--UUCACAGCAGUU ----.................((.-----.((((((.....))))))------.....(((((.(((.....)))))--)))...)).... ( -16.40, z-score = 0.79, R) >dp4.chr3 11981303 74 - 19779522 ----UUUUGGUACUAUGGGCAGCG-----GCAGCGCAAUUAGCGUUG------GAAUAGAGAAAUGCGCAGUGCAUU--UUCACAGCAGUU ----.................((.-----.((((((.....))))))------.....(((((.(((.....)))))--)))...)).... ( -16.40, z-score = 0.79, R) >droEre2.scaffold_4929 8016618 91 - 26641161 GCGUUUUCGGUACUGUUAGUACUACUCGCGAUGCACAAUUAACUUUGGCUCUGGGUGAGGGAAGUGCGCAGUACCCGGAAUUGCGGCAAUC (((.((((((((((((..(((((.(((((((.((.(((......)))))))...)))))...))))))))))).)))))).)))....... ( -32.50, z-score = -2.28, R) >droYak2.chr2L 16659610 91 + 22324452 GCGUUUUUGGUACUGUUAGUACUACUCGAGAUGCACAAUUAACUUUGGUUCUGGGUGAGGGAAGUGCGCAGUACCCGGAAUCGCGGCAAUC (((((((((((((.....))))))...)))))))........((.((((((((((((..(........)..)))))))))))).))..... ( -30.00, z-score = -2.02, R) >droSec1.super_1 1648160 91 + 14215200 GCGUUUUUGGUACUGCUCGUACUAAUCGAGAUGCACAAUUAACUUUGUCUCUGGGCGAGGGAAGUGCGCAGUACCCGGAAUCGCGGCAAUC ((((((..(((((((((((.......)))...((((......(((((((....)))))))...))))))))))))..))).)))....... ( -34.30, z-score = -3.02, R) >droSim1.chr2R 2700214 91 + 19596830 GCGUUUUUGGUACUGCUCGUACUACUCGAGAUGCACAAUUAACUUUGUCUCUGGGCGAGGGAAGUGCGCAGUACCCGGAAUCGCGGCAAUC ((((((..(((((((((((.......)))...((((......(((((((....)))))))...))))))))))))..))).)))....... ( -34.30, z-score = -2.83, R) >consensus GCGUUUUUGGUACUGUUCGUACUACUCGAGAUGCACAAUUAACUUUGUCUCUGGGCGAGGGAAGUGCGCAGUACCCGGAAUCGCGGCAAUC (((.((((((((((((..(((((..(((.......(((......)))........)))....)))))))))))).))))).)))....... (-13.80 = -16.37 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:17 2011