| Sequence ID | dm3.chr2R |
|---|---|
| Location | 4,007,991 – 4,008,100 |
| Length | 109 |
| Max. P | 0.727443 |
| Location | 4,007,991 – 4,008,100 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 85.74 |
| Shannon entropy | 0.25165 |
| G+C content | 0.44634 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -22.01 |
| Energy contribution | -22.01 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 4007991 109 + 21146708 --------GGAAAAAAAAGUAACAAGCGAAUCGGCCAAGACCGAACUCC-GGGAAACCUGACUAUUUGCGAUUGCAAUUCUAUACUACGCGAUAGUCGCUGAGUGGCAAACAUCUGGG --------.................((.(.(((((..............-((....)).(((((((.(((.................))))))))))))))).).))........... ( -24.53, z-score = -0.43, R) >droEre2.scaffold_4929 8014383 111 - 26641161 ------UGCUGAA-AAAAAUUACAAGCGAAUCGGCUAAGAACGAACCCCAGGGAAACCUGACUAUUUGCGAUUGCAAUUCUAUACUACGCGAUAGCCGUUGAGUGGCAAACAUCUGUG ------.((.((.-...........((((((((........)))....((((....))))....)))))(.((((.((((...((...((....)).)).)))).)))).).)).)). ( -24.60, z-score = -1.07, R) >droYak2.chr2L 16657301 112 + 22324452 ------UGCUGAACAAAAGUUACAAGCGAAUCGGCCAAGAACGAACUUCGGGGAAACCUGAAUAUUUGCGAUUGCAAUUCUAUACUACGCGAUAGUCGUUGAGUGGCAAACAUCUAGG ------.(((.(((....)))...)))......((((..(((((..((((((....))))))...(((((.................)))))...)))))...))))........... ( -28.93, z-score = -1.67, R) >droSec1.super_1 1645963 114 + 14215200 ---UGAUGAAAAAAAAAACUAACAAGCGAAUCGGCCAAGACCGAACUCC-GGGAAACCUGACUAUUAGCGAUUGCAAUUCUAUACUACGCGAUAGUCGCUGAGUGGCAAACAUCUGGG ---.((((......................((((......))))((((.-((....)).(((((((.(((.................))))))))))...))))......)))).... ( -25.73, z-score = -1.38, R) >droSim1.chr2R 2697982 112 + 19596830 UGAUGAAAAAAAAAACAACUAACAAGCGAAUCGGCCAAGACCGAACUCC-GGGAAACCUGACUAUUUGCGAUUGCAAUUCUAUACUACGCGAUAGUCGCCGAGUGGCAAACAU----- .........................((.(.(((((..............-((....)).(((((((.(((.................))))))))))))))).).))......----- ( -26.73, z-score = -2.51, R) >consensus ______UGAAAAAAAAAACUAACAAGCGAAUCGGCCAAGACCGAACUCC_GGGAAACCUGACUAUUUGCGAUUGCAAUUCUAUACUACGCGAUAGUCGCUGAGUGGCAAACAUCUGGG .........................((.(.(((((...............((....)).(((((((.(((.................))))))))))))))).).))........... (-22.01 = -22.01 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:16 2011