| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,979,052 – 3,979,121 |
| Length | 69 |
| Max. P | 0.876239 |
| Location | 3,979,052 – 3,979,121 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 71.41 |
| Shannon entropy | 0.55945 |
| G+C content | 0.58318 |
| Mean single sequence MFE | -19.34 |
| Consensus MFE | -10.70 |
| Energy contribution | -12.20 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3979052 69 + 21146708 GCUAUUGGCUACCUGGGAGAGGGGAUUCCUCUCUUAACAACAGAUCGCCCAUCACCGAUCCCCAUUCGU ((.....))....(((((((((((...)))))))........(((((........)))))))))..... ( -18.70, z-score = -0.70, R) >dp4.chr3 11955644 65 - 19779522 GCGCUCUGCUCUCUCCGUCUCGUCAGCCUCCUCUCCACCCUCCUCCACAUA--GACGAUCGCCACGG-- ((.....)).....((((.(((((...........................--))))).....))))-- ( -6.03, z-score = 0.87, R) >droEre2.scaffold_4929 7992548 68 - 26641161 GCGAUCGGCUACCUCAGAGAGGG-AUUCCUCUCUUUCCAAAAGAUCGCCGAUCCCCGAUCCCCAUUCGG ..(((((((......(((((((.-...))))))).((.....))..))))))).((((.......)))) ( -24.60, z-score = -2.73, R) >droYak2.chr2L 16636490 65 + 22324452 GCGACCAGCCACCUUAGAGAGGG-AUUCCUCUCUUUCCGAAAGAUCGCCA---CGAGAUCCCCAUUCGG ((.....))......(((((((.-...)))))))..(((((.((((....---...))))....))))) ( -17.90, z-score = -1.42, R) >droSec1.super_1 1623347 69 + 14215200 GCGAUUUGCUACCUGGGAGAGGGGAUUCCUCUCUUUCCAACAGAUCGCCCAUCCCCGAUCCCCAUUCGG ((((((((.....(((((((((((...)))))).))))).))))))))......((((.......)))) ( -25.20, z-score = -2.46, R) >droSim1.chr2R 2678722 69 + 19596830 GCGAUUGGCUACCUGGGAGAGGGGAUUCCUCUCUUUCCAACAGAUCGCCCAUCCCCGAUCCCCAUUCGG .(((.(((.....(((((((((((...)))))).)))))...(((((........))))).))).))). ( -23.60, z-score = -1.14, R) >consensus GCGAUCGGCUACCUGGGAGAGGGGAUUCCUCUCUUUCCAACAGAUCGCCCAUCCCCGAUCCCCAUUCGG ((((((.........(((((((.....)))))))........))))))..................... (-10.70 = -12.20 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:12 2011