| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,970,664 – 3,970,774 |
| Length | 110 |
| Max. P | 0.797191 |
| Location | 3,970,664 – 3,970,774 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 89.78 |
| Shannon entropy | 0.17844 |
| G+C content | 0.46703 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -24.84 |
| Energy contribution | -25.48 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3970664 110 + 21146708 ----AUUACCUGCCUUACCACCAAUUGCUAACAAUUGUUCUAACCGUGUUAACACGCACACAUCGUAACUGUGUGCUCCGAGUGCCUUGGGAAGUGUUUCCUCAAAAAGUGGUG ----...........((((((((((((....))))))........(.(..((((((((((((.......)))))))((((((...))))))..)))))..).).....)))))) ( -31.70, z-score = -2.74, R) >droSim1.chr2R 2670065 114 + 19596830 AUUACCUACCUGCCUUACCGCCAAUUGCUACCAAUUGUUCUAACCGUGUUAACACGCACACAACGCAACCGUGUGCUCCGAGUGCCUUGGGAAGUGUUUCCUCAAAAAGUGGUG ...............((((((((((((....))))))........(.(..(((((((((((.........))))))((((((...))))))..)))))..).).....)))))) ( -29.50, z-score = -1.53, R) >droSec1.super_1 1614774 110 + 14215200 ----AUUACCUGCCUUACCGCCAAUUGCUACAAAUUGUUCUAACCGUGUUAACACGCACACAACGCAACCGUGUGCUCCGAGUGCCUUGGGAAGUGUUUUCUCAAAAAGUGGUG ----...........(((((((((((......)))))........(.(..(((((((((((.........))))))((((((...))))))..)))))..).).....)))))) ( -28.00, z-score = -1.00, R) >droYak2.chr2L 16627747 107 + 22324452 ----AUUACCUGCCUUAGCGCAAAUUGUUAACAAUUGCUUUAACCGUGGUAACACGCACACAUCGCAACCGUGUGCUCCGAGUGCCUUGGGAAGAGUUUCCUUAAAAAGUG--- ----.(((((....((((.((((.(((....))))))).))))....)))))(((((((((.........))))))((((((...)))))).................)))--- ( -25.40, z-score = -0.43, R) >droEre2.scaffold_4929 7983773 109 - 26641161 -----AUACCUGCCUUACCGCCAAUUGUUAACAAUUGUUCUAACCGUGUUAACACGCACACAUCGCAACCGUGUGCUCCGAGUGCCUUGGAAAGUGUUUCCUUAAAAAGUGGUG -----..........((((((((((((....))))))..........(..(((((((((((.........))))))((((((...))))))..)))))..).......)))))) ( -30.50, z-score = -2.72, R) >consensus ____AUUACCUGCCUUACCGCCAAUUGCUAACAAUUGUUCUAACCGUGUUAACACGCACACAUCGCAACCGUGUGCUCCGAGUGCCUUGGGAAGUGUUUCCUCAAAAAGUGGUG ...............((((((((((((....))))))........(.(..(((((((((((.........))))))((((((...))))))..)))))..).).....)))))) (-24.84 = -25.48 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:09 2011