| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,965,558 – 3,965,669 |
| Length | 111 |
| Max. P | 0.988316 |
| Location | 3,965,558 – 3,965,669 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.98 |
| Shannon entropy | 0.48125 |
| G+C content | 0.54757 |
| Mean single sequence MFE | -36.57 |
| Consensus MFE | -19.65 |
| Energy contribution | -21.07 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.988316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3965558 111 + 21146708 AACGAGCGUGGAUGCCAGCAACAC----ACCAACAGCAGCAAUAGUUAAGACGACAACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCAACAGCA .....(((((..((....)).)))----.......(((((....)))..(((((...((((((((((((((((....))))))..)))))))))).))))).....))....)). ( -39.90, z-score = -2.52, R) >droSim1.chr2R 2663443 111 + 19596830 AACGAGCGCGGAUGGAAGCAACAC----GCCAACAGCAACAAUAGUGAAGACGACGACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCAAGAGCA .....((((((.((....)).).)----)).....((..(....((....))(((((((((((((((((((((....))))))..)))))))))).)))))..)..))....)). ( -43.10, z-score = -3.06, R) >droSec1.super_1 1609338 111 + 14215200 AACGAGCGCGGAUGGAAGCAACAC----GCCAACAGCAACAAUAGUGAAGACGACGACAUCGGCGAUGCCGGCCAUUCCCGGCCAGCUGCUGAUGCUGGUCAAGGAGCAAGAGCA .....((((((.((....)).).)----)).....((..(....((....))(((.(((((((((..((.((((......)))).)))))))))).).)))..)..))....)). ( -35.10, z-score = -0.43, R) >droYak2.chr2L 16622096 102 + 22324452 AACGACCGUAGAUGAAACCAGCAC----GCCUUCAGCAGCAAUAGUGAAGACGAC---AUCAGCGAUGCCGGGCAUUCCCGGCCAAUUGCUGAUGCUCGUCAAGGAGCA------ ....................((..----.((((((..(....)..))))((((((---(((((((((((((((....))))))..)))))))))).)))))..)).)).------ ( -38.50, z-score = -3.30, R) >droEre2.scaffold_4929 7978082 102 - 26641161 AACUACCGUAGAUGCAACUACAAC----GCCAUCAGCAGCAAUAGUGAAGACGAC---AUCGGCGAUGCCGGGAAUUCCCGGUCAGUUGCUGAUGCUCGUCAAGGAGCA------ .((((..((((......))))...----((.....)).....))))...((((((---(((((((((((((((....))))))..)))))))))).)))))........------ ( -39.70, z-score = -3.58, R) >droAna3.scaffold_13266 16282927 109 + 19884421 CAUCAGCAUCCACAUCAUCAUCAUCAAUAGCAGCAGAAGCAACCAUAGUAACCACAAGUCCAUCGGCGGCGGCCACUCCAGGCCAUUUGUUGAUGCUCGUAAAAGAUAC------ .((.((((((.(((...............((.((....)).................(((....))).))((((......))))...))).)))))).)).........------ ( -23.10, z-score = -1.49, R) >consensus AACGAGCGUGGAUGCAAGCAACAC____GCCAACAGCAGCAAUAGUGAAGACGAC_ACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCA______ .................................................(((((....(((((((((((((((....))))))..)))))))))..))))).............. (-19.65 = -21.07 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:09 2011