| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,959,000 – 3,959,092 |
| Length | 92 |
| Max. P | 0.625918 |
| Location | 3,959,000 – 3,959,092 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 67.07 |
| Shannon entropy | 0.64268 |
| G+C content | 0.65715 |
| Mean single sequence MFE | -36.56 |
| Consensus MFE | -16.19 |
| Energy contribution | -17.27 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3959000 92 - 21146708 GCUGCCUGCUCCUCCGCCGGCAGCUGCGCUCGCUCCUGUACCCGCUCCUGACUGUGUGC---CCUGGGAC------UGCAGCUGGGGCGGUGGAUUACUGA ((((((.((......)).)))))).((....))(((.....(((((((.(.((((((.(---....).))------.))))).))))))).)))....... ( -38.10, z-score = -0.77, R) >droSim1.chrU 11078894 92 - 15797150 GCUGCCUGCUCCUCCGCCGGCAGCUGCACUCGCUCCUGUACCCGCUCCUGACUGUGUGC---CCUGGGAU------UGCAGCUGAGGCGGUGGAUUACUGA ((.....))(((.(((((..((((((((.((.(....((((..((........))))))---...).)).------)))))))).))))).)))....... ( -38.20, z-score = -1.92, R) >droSec1.super_1 1602761 92 - 14215200 GCUGCCUGCUCCUCCGCCGGCAGCUGCACUCGCUCCUGUACCCGCUCCUGACUGUGUGC---CCUGGGAU------UGCAGCUGAGGCGGUGGAUUACUGA ((.....))(((.(((((..((((((((.((.(....((((..((........))))))---...).)).------)))))))).))))).)))....... ( -38.20, z-score = -1.92, R) >droYak2.chr2L 16615109 92 - 22324452 GCUGCCCGCUCCUCCGCCGGCAGCUGCGCUCGCUCCUGUACCCGCUCCUGACUGUGUGG---CCUGGGAC------UGCAGCUGGGGUGGUGGAUUACUGA ((.....))(((.(((((..((((((((...(.(((((..(((((........))).))---..))))))------)))))))).))))).)))....... ( -35.20, z-score = 0.55, R) >droEre2.scaffold_4929 7971001 92 + 26641161 GCUUCCUGCCCCUCCGCCGGCAGCUGCGGUCGCUCCCGUACCCGCUCCUGACUGUGUGC---CCUGGGAC------UGCAGCUGGGGUGGUGGAUUACUGA ((.....)).((.(((((..(((((((((((.(....((((..((........))))))---...).)))------)))))))).))))).))........ ( -38.20, z-score = -0.76, R) >droAna3.scaffold_13266 16276473 101 - 19884421 GCUGCCCGCUCCGCCGCUGGCAGCCGUACCAGCACCCGAUCCACUACCGGAUUGUGUGCUGGCCUGGGACUGCGAUUGCAGCUGAGGCGGUGGAUUGCUGA .......(((((((((((..((((((..(((((((.((((((......)))))).)))))))..)))..((((....))))))).)))))))))..))... ( -50.30, z-score = -3.11, R) >droWil1.scaffold_181141 2984850 80 + 5303230 ---------------GGUACUGGCUGCCACACCAGCAGCGCUGCUGGAGUUCUGCGUACUCUGGUUUGGU------UGCAGUUGGGGCGGUGGAUUGCUCA ---------------((((.(.((((((.((.(.(((((...((..((((.......))))..))...))------))).).)).)))))).)..)))).. ( -29.00, z-score = 0.49, R) >droVir3.scaffold_12875 14854142 74 - 20611582 ------------------AACGCUUGCACCACCGCCCGCAACGCU---GCUCGGCGUGCUUACCACCGAC------UGCAGCUGUGGAGGCGGAUUACUGA ------------------..(((((((......))(((((..(((---((((((.(.......).)))).------.)))))))))))))))......... ( -25.30, z-score = -0.60, R) >consensus GCUGCCUGCUCCUCCGCCGGCAGCUGCACUCGCUCCUGUACCCGCUCCUGACUGUGUGC___CCUGGGAC______UGCAGCUGGGGCGGUGGAUUACUGA ..........((.(((((..((((((((......((((..........................))))........)))))))).))))).))........ (-16.19 = -17.27 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:08 2011