| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,936,551 – 3,936,655 |
| Length | 104 |
| Max. P | 0.681518 |
| Location | 3,936,551 – 3,936,655 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 85.09 |
| Shannon entropy | 0.25227 |
| G+C content | 0.54400 |
| Mean single sequence MFE | -38.36 |
| Consensus MFE | -25.61 |
| Energy contribution | -25.97 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3936551 104 + 21146708 CCGCACACACUCGCCCACACAGAUGCAGGGCAUAUAUUCGGUCAAUU----------CGGAUGCCAAUGGCAACAAUUUGUGACCACAAGGAGUCAGGGGAAGUGUGAGUAAAU ..((.((((((..(((.(((((((....((((....(((((.....)----------))))))))..((....))))))))).((....)).....)))..)))))).)).... ( -33.70, z-score = -2.26, R) >droEre2.scaffold_4929 7948804 113 - 26641161 CCGCACACACUCGCCCACACAGAUGCAGCGGAUAUAUUCGGUCAGCCG-GAGCGACGCGGAUGCCAGUGCCAAGCACUGGUGACCACAAGGGGUCAGGGCAAGUGUGGGUAAAU ..((.((((((.((((...........(((......(((((....)))-))....)))....((((((((...))))))))((((......)))).)))).)))))).)).... ( -47.90, z-score = -2.95, R) >droYak2.chr2L 16592683 114 + 22324452 CCCCACACACUCGCCCACACAGAUGGAGGGGAUAUAUUCGGUCAGCCGUGAGGGACGCGGAUGCCACUACCAACCAUUGGUGACCACAAGGGGUUAGGGAAAGUGUGAGCGAAU .....((((((..(((.(((.(((((..((....(((((((((..((....))))).))))))......))..))))).)))(((......)))..)))..))))))....... ( -41.70, z-score = -1.68, R) >droSec1.super_1 1580453 104 + 14215200 CCGCACACAUUCGCCCACACAGAUGCAGGGGAUAUAUUCGGUCAGUU----------CGGAUGCCAAUGGCAACCAUUGGUGACCACAAGCGGUCAGGGAAAGUGUGAGUAAAU ..((.((((((..(((...................((((((.....)----------)))))((((((((...))))))))((((......)))).)))..)))))).)).... ( -33.60, z-score = -1.57, R) >droSim1.chr2R 2640855 104 + 19596830 CCGCACACAUUCGCCCACACAGAUGCAGGGGAUACAUUCGGUCAGUU----------CGGAUGCCAAUGGCAACCAUUGGUGACCACAAGGGGUCAGGGAAAGUGUGAGUAAAU ..((.((((((..(((..................(((((((.....)----------))))))(((((((...)))))))(((((......))))))))..)))))).)).... ( -34.90, z-score = -1.71, R) >consensus CCGCACACACUCGCCCACACAGAUGCAGGGGAUAUAUUCGGUCAGUU__________CGGAUGCCAAUGGCAACCAUUGGUGACCACAAGGGGUCAGGGAAAGUGUGAGUAAAU ..((.((((((..(((..................((((((.................))))))(((((((...)))))))(((((......))))))))..)))))).)).... (-25.61 = -25.97 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:05 2011