| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,318,017 – 2,318,107 |
| Length | 90 |
| Max. P | 0.884173 |
| Location | 2,318,017 – 2,318,107 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 86.26 |
| Shannon entropy | 0.26105 |
| G+C content | 0.43267 |
| Mean single sequence MFE | -19.77 |
| Consensus MFE | -16.31 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2318017 90 - 23011544 CAAAAAUCAAUAUGAGCAUGAAAUAUGCCCUGGCAAUGCUCGUAAGCCCAAAA--UGUGGUCUUCUCUACUCGGCUAAUCCUGUGCACUACU ..........(((((((((......(((....))))))))))))((((.....--.((((......))))..))))................ ( -20.30, z-score = -1.98, R) >droSim1.chr2L 2275518 90 - 22036055 CAAAAAUCAAUAUGAGCAUGAAAUAUGCCCUGGCAAUGCUCGUAAGCCCAAAA--UGUGGUCUUCUCUGCUCGGCUAAUCCUGUGCACUACU ..........(((((((((......(((....))))))))))))((.(((...--..))).))....(((.(((......))).)))..... ( -19.60, z-score = -1.18, R) >droSec1.super_5 489088 90 - 5866729 CAAAAAUCAAUAUGAGCAUGAAAUAUGCCCUGGCAAUGCUCGUAAGCCCAAAA--UGUGGUCUUCUCUACUCGGCUAAUCCUGUGCACUACU ..........(((((((((......(((....))))))))))))((((.....--.((((......))))..))))................ ( -20.30, z-score = -1.98, R) >droYak2.chr2L 2296917 90 - 22324452 CAAAAAUCAAUAUGAGCAUGAAAUAUGCCCUGGCAAUGCUCAUAAGCCCAAAA--UGUGGUCUUCUCUGCUCGGCUAAUCCUGUGCACUACU ..........(((((((((......(((....))))))))))))((.(((...--..))).))....(((.(((......))).)))..... ( -20.00, z-score = -1.35, R) >droEre2.scaffold_4929 2352364 92 - 26641161 CAAAAAUCAAUAUGAGCAUGAAAUAUGCCCGGGCAAUGCUCAUAAGCCCAAAAUGUGUGGUCUUCUCCGCUCGGCUAAUCCUGUGCACUACU ..........(((((((((......(((....))))))))))))((((......(.((((......)))).)))))................ ( -22.10, z-score = -1.30, R) >droAna3.scaffold_12916 10036903 81 + 16180835 CAAAAAUCAAUAUGAGCAUGAAAU-----------AUGCUCAUAAGCCUAAAAUGUGUGCUUUCUAGCCGCUUUCUAAUCCUCCCCAGCACU ..........((((((((((...)-----------)))))))))..........(((.(((....))))))..................... ( -16.30, z-score = -2.83, R) >consensus CAAAAAUCAAUAUGAGCAUGAAAUAUGCCCUGGCAAUGCUCAUAAGCCCAAAA__UGUGGUCUUCUCUGCUCGGCUAAUCCUGUGCACUACU ..........(((((((((......(((....))))))))))))((((........((((......))))..))))................ (-16.31 = -16.18 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:52 2011