| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,918,247 – 3,918,349 |
| Length | 102 |
| Max. P | 0.754771 |
| Location | 3,918,247 – 3,918,349 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 62.70 |
| Shannon entropy | 0.69183 |
| G+C content | 0.56371 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -8.12 |
| Energy contribution | -9.71 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3918247 102 + 21146708 --CCCCCUCGGUGGCGUUACCCAGCC-CUACUACUGCCGCCACAACGUUCGUAACCCCUAUUCAACGAGCCGUUGUUAUCCUGGAACUGGAACUGCAACAGUAUU --...((..((((((((.........-.....)).))))))(((((((((((............))))).))))))......)).((((.........))))... ( -24.64, z-score = -0.93, R) >droSim1.chr2R 2618118 102 + 19596830 --CCCCCUCGGUGGCGGCACCCAGCC-CUACCACUGCCGCCACAACGUUCGUAACCCCUAUUCAACGAGCCGUUGUUAUCCUGGAACUGGAGCUGCAACAGUAUU --........(((((((((.......-.......)))))))))...((((((............)))))).(((((..(((.......)))...)))))...... ( -31.84, z-score = -2.08, R) >droSec1.super_1 1557644 102 + 14215200 --CCCCCUCGGUGGCGGCACCCAGCC-CUACCACUGCCGCCACAACGUUCGUAACCCCUAUUCAACGAGCCGUUGUUAUCCUGGAACUGGAACUGCAACAGUAUU --........(((((((((.......-.......)))))))))...((((((............)))))).(((((..(((.......)))...)))))...... ( -30.74, z-score = -2.15, R) >droYak2.chr2L 16573892 98 + 22324452 UACCCCCUCGGUGGCGGCACCCAGCC-CUACCACUGCCGCCACAACGUUCGUAACCCCUAUUCAACGACCCGUUGUUAUCCUGCAA------CUGCAACAGUAUU .........(((((.(((.....)))-)))))((((.....((((((.((((............))))..)))))).....(((..------..))).))))... ( -25.50, z-score = -2.60, R) >droWil1.scaffold_181141 2351031 98 + 5303230 -GCUUCCCUCGCAACACCGCGGACUCUCUUAUUCAGCCUCAUCACGUUGCCAACUUCCAACCCUAACCCGCUGUUUGUUGUUGCGA------UUGCAACUGUAUG -((.....((((((((..((((((..........(((........((((........))))........)))))))))))))))))------..))......... ( -18.39, z-score = -1.59, R) >droMoj3.scaffold_6496 19772585 87 - 26866924 -----------CCAAUGCGCCUAGCC-CCCGCUCUGUCUCGCUGCCUCUCUCUCUCUCACUCUUACAUGGCCACGCUCCCUUGCAA------UUGCAACUGUAUG -----------...((((((..(((.-...)))..))...((.(((......................)))...((......))..------..))....)))). ( -9.75, z-score = 0.55, R) >consensus __CCCCCUCGGUGGCGGCACCCAGCC_CUACCACUGCCGCCACAACGUUCGUAACCCCUAUUCAACGAGCCGUUGUUAUCCUGCAA______CUGCAACAGUAUU ..........(((((((((...............)))))))))(((((((((............)))))).)))............................... ( -8.12 = -9.71 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:03 2011