| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,914,813 – 3,914,867 |
| Length | 54 |
| Max. P | 0.794907 |
| Location | 3,914,813 – 3,914,867 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.03401 |
| G+C content | 0.46296 |
| Mean single sequence MFE | -6.83 |
| Consensus MFE | -7.09 |
| Energy contribution | -7.20 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.85 |
| Structure conservation index | 1.04 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3914813 54 + 21146708 CCUUGCCAAUCGCAAGUCGCCACUUGCUUAUGAAGUUAUUUCAUCCUCGUUUUC ...........((((((....))))))..((((((...)))))).......... ( -7.40, z-score = -1.37, R) >droSim1.chr2R 2614694 54 + 19596830 CCUUGCCAAUCGCCAGUCGCCACUUGCUUAUGAAGUUAUUUCAUCCUCGUUUUC ...........((.(((....))).))..((((((...)))))).......... ( -3.30, z-score = 0.59, R) >droSec1.super_1 1554159 54 + 14215200 CCUUGCCAAUCGCCAGUCGCCACUGGCUUAUGAAGUUAUUUCAUCCUCGUUUUC ...........((((((....))))))..((((((...)))))).......... ( -9.80, z-score = -1.77, R) >consensus CCUUGCCAAUCGCCAGUCGCCACUUGCUUAUGAAGUUAUUUCAUCCUCGUUUUC ...........((((((....))))))..((((((...)))))).......... ( -7.09 = -7.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:03 2011