| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,914,498 – 3,914,587 |
| Length | 89 |
| Max. P | 0.508505 |
| Location | 3,914,498 – 3,914,587 |
|---|---|
| Length | 89 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 66.96 |
| Shannon entropy | 0.52171 |
| G+C content | 0.37470 |
| Mean single sequence MFE | -20.00 |
| Consensus MFE | -12.61 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3914498 89 - 21146708 UCCCCAGGACUUAUCGACUGCCGAGGGUAUAUCGUGUUCACGGGGGUUUUCUUAAGUGAAUGUUUAUAAUAAAUAAUUUAAUGCUUUAU---------- .(((..((.(.........)))..)))((((..(..(((((..(((....)))..)))))..).)))).....................---------- ( -14.80, z-score = 1.12, R) >droSec1.super_1 1553855 88 - 14215200 UCCCCAGGACUCAACGAUUUCCGAAGGUAUAUCGUGUUCCCAGGGGUUUUCUUAAAUGAAUGUAAACAAUAAAUAAUUUAAACAAAUA----------- .((((.(((....(((((...(....)...)))))..)))..))))..(((......)))............................----------- ( -15.70, z-score = -0.37, R) >droYak2.chr2L 16570118 97 - 22324452 -UCCCCGGACUCACAGAUACCCGAGGGUAUAUCUUGUUCGGGGGGCUUGCUUA-AAUGAAUGCUUUUAAUAUAGAAUUUAAACGUAAUGAUCUGAAAUA -(((((((((......(((((....))))).....)))))))))......(((-.((.(.(((.(((((........))))).))).).)).))).... ( -25.00, z-score = -1.44, R) >droEre2.scaffold_4929 7927593 86 + 26641161 UCCCCAGGACUCACAGAUCUCCGAGGGUAUAUCUUGUUCUGGGGCCUUGCUUGUACUAUAUGUUUAUAAUAUAUAAUGCAAAGUUA------------- .(((((((((....((((..((...))...)))).)))))))))....(((((((.(((((((.....))))))).))).))))..------------- ( -24.50, z-score = -1.96, R) >consensus UCCCCAGGACUCACAGAUUUCCGAGGGUAUAUCGUGUUCACGGGGCUUGCCUUAAAUGAAUGUUUAUAAUAAAUAAUUUAAACAUAUA___________ .(((((((((....((((..((...))...)))).)))))))))....................................................... (-12.61 = -13.30 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:02 2011