| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,912,950 – 3,913,042 |
| Length | 92 |
| Max. P | 0.967638 |
| Location | 3,912,950 – 3,913,042 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 63.23 |
| Shannon entropy | 0.73970 |
| G+C content | 0.45323 |
| Mean single sequence MFE | -19.54 |
| Consensus MFE | -5.97 |
| Energy contribution | -5.69 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.69 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3912950 92 - 21146708 CUCUCUCCCUCCGCCAU---CCAAUACCACGCUCAUUGUCCUUGUGGACAAUAUCGAAUUUGCCAUAUUUGGUUAAAAUAAUCGUGCCCAAAAUG .................---.......((((...(((((((....))))))).........((((....)))).........))))......... ( -15.40, z-score = -2.05, R) >droSim1.chr2R 2612724 92 - 19596830 CUCUCUCCCACUGCCGU---CCGAUACCUCGCUCAUUGUCCUUGUGGACAAUAUCGAAUUUGCCAUAUUUGGUCAAAAUAAUCGGGCCCAAAAUG ...............((---(((((...(((...(((((((....)))))))..))).(((((((....))).))))...)))))))........ ( -25.80, z-score = -4.19, R) >droSec1.super_1 1552223 91 - 14215200 CUCUC-CCCACCGCCGU---CCGAUACCUCGCUCAUUGUCCUUGUGGACAAUAUCGAAUUUGCCAUAUUUGGUCAAAAUAAUCGGGCCCAAAAUG .....-.........((---(((((...(((...(((((((....)))))))..))).(((((((....))).))))...)))))))........ ( -25.80, z-score = -4.00, R) >droYak2.chr2L 16568507 95 - 22324452 CUCACCGCCUCUCGCCUAUCCAGAGGCAUCGCUCAUUGUCCUUGUGGCCAAUAUCGAAUUUGCCAUAUUUGGUCAAAAUAAUCGGGCCCAAAAUG ....((((((((.(.....).))))))........(((.((.((((((.(((.....))).))))))...)).))).......)).......... ( -24.20, z-score = -1.93, R) >droEre2.scaffold_4929 7926073 85 + 26641161 CUCACAGCCUCCCUCC---------GCCGCGCCCAUUGUCCUUGUGGACAAUAUCGAAUUUGCCAUAUUUGGUCAAAAUAAUCGGGCCC-AAAUG ................---------...(.(((((((((((....)))))))......(((((((....))).))))......)))).)-..... ( -22.80, z-score = -2.39, R) >droAna3.scaffold_13266 16229899 86 - 19884421 UUUCCUGCCACUCUUUU--------AACCCUUUUG-UGUCCCUACGGACAAUAUCGAAUUUGCCAUAUUUGGUUUGAAUAAUCGUACCGAAAAUG .................--------..........-(((((....))))).............(((.((((((.(((....))).)))))).))) ( -13.50, z-score = -1.39, R) >droVir3.scaffold_12875 14809976 73 - 20611582 -------------------GCAACUGUUCAGCCGGGACAGCCGGGCAACAAUAUCGAAUUUGCCAUUUUUGGUCAAAAUUAUCUGUUUUGCG--- -------------------((((.((((..(((.((....)).)))))))........(((((((....))).))))..........)))).--- ( -18.10, z-score = -0.97, R) >droMoj3.scaffold_6496 19765743 70 + 26866924 -------------------GCCACAGUCGAGUCAG---AGUCAAGCCACAAUAUCGAAUUUGCCAUUUUUGGUCAAAAUUAUCUGUUUUGCG--- -------------------((.((((((((.....---...............)))).(((((((....))).)))).....))))...)).--- ( -10.75, z-score = -0.16, R) >consensus CUCUC_CCCACCCCC_U___CCAAUACCUCGCUCAUUGUCCUUGUGGACAAUAUCGAAUUUGCCAUAUUUGGUCAAAAUAAUCGGGCCCAAAAUG ..............................((((.....((....))...........(((((((....))).))))......))))........ ( -5.97 = -5.69 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:07:01 2011