| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,809,169 – 3,809,219 |
| Length | 50 |
| Max. P | 0.906373 |
| Location | 3,809,169 – 3,809,219 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 94.67 |
| Shannon entropy | 0.07346 |
| G+C content | 0.30000 |
| Mean single sequence MFE | -7.80 |
| Consensus MFE | -7.10 |
| Energy contribution | -7.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3809169 50 - 21146708 UCACUCAACGGAUCUGAAUUUAUUCGGAAAACUGAAUAAAAGUACAACUU ..................(((((((((....))))))))).......... ( -7.10, z-score = -1.64, R) >droSec1.super_1 1445408 50 - 14215200 ACAGUUAACUGAUCUGAAUUUAUUCGGAAAACUGAAUAAAAGUACAACUU .(((....))).......(((((((((....))))))))).......... ( -9.20, z-score = -2.45, R) >droSim1.chr2R 2498319 50 - 19596830 UCACUCAACUGAUCUGAAUUUAUUCGGAAAACUGAAUAAAAGUACAACUU ..................(((((((((....))))))))).......... ( -7.10, z-score = -1.97, R) >consensus UCACUCAACUGAUCUGAAUUUAUUCGGAAAACUGAAUAAAAGUACAACUU ..................(((((((((....))))))))).......... ( -7.10 = -7.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:51 2011