| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,799,137 – 3,799,229 |
| Length | 92 |
| Max. P | 0.930575 |
| Location | 3,799,137 – 3,799,229 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 86.99 |
| Shannon entropy | 0.22594 |
| G+C content | 0.53873 |
| Mean single sequence MFE | -35.00 |
| Consensus MFE | -26.81 |
| Energy contribution | -27.03 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.930575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3799137 92 + 21146708 CACCCAAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGGUAUAUGCGAUAUA---------UGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAA ..(((....(((.((((((..((((((..(((((..(((((((((.......)).))))---------)))..)))))))))))..)))))).)))))).. ( -37.30, z-score = -2.69, R) >droEre2.scaffold_4929 7813111 101 - 26641161 CACCCAAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUACACGAUAUACACGAUAAAUGCGAUGUGUUUCAAGGCCGGGCUGAGCGGGAA ..(((...(((((..(((.......)))..)...(((((((((...)))))..((.(((((((.......)).))))).))...))))))))....))).. ( -30.60, z-score = -0.82, R) >droYak2.chr2L 16456353 89 + 22324452 CACCCAAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUGU---UUGUA---------UGCGAUGUGUUUCAAGGUUGGACUGAGCGGGAA ..(((....(((.(..(((.((((..(..(((((...(((((((((.....---)))))---------)))).)))))..).)))))))..).)))))).. ( -31.10, z-score = -1.84, R) >droSec1.super_1 1435407 83 + 14215200 CACCCAAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGUUA---------UA---------UGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAA ..(((....(((.((((((..((((((..(((((..(((((((...))---------))---------)))..)))))))))))..)))))).)))))).. ( -34.50, z-score = -2.70, R) >droSim1.chr2R_random 1037751 92 + 2996586 CACCCAAAAGCUGAGCCCGUAUUUGGGGGGCACACGGCGUAUGCGUUAUAUGCGCUAUA---------UGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAA ..(((....(((.((((((..((((((..(((((..((((((((((.....)))).)))---------)))..)))))))))))..)))))).)))))).. ( -41.50, z-score = -3.35, R) >consensus CACCCAAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUAU_CGAUAUA_________UGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAA ..(((....(((.((((((.......(..(((((..(((.......((((.....)))).........)))..)))))..).....)))))).)))))).. (-26.81 = -27.03 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:50 2011