| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,797,994 – 3,798,093 |
| Length | 99 |
| Max. P | 0.555344 |
| Location | 3,797,994 – 3,798,093 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 68.42 |
| Shannon entropy | 0.58954 |
| G+C content | 0.64668 |
| Mean single sequence MFE | -40.55 |
| Consensus MFE | -16.17 |
| Energy contribution | -17.15 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3797994 99 - 21146708 CUUUCACCUGCCCCGCUUGCCACCGCAGGCAGUGGGGAAAUUGCACGAUGGGAGGCUGGCU--GGAGGAGGCCCCACAGCCGGAGAGAGGGUGGGAGUCUG--- ((..(((((.(((((((.(((......))))))))))..................((((((--(..((....))..))))))).....)))))..))....--- ( -45.70, z-score = -1.14, R) >droSim1.chr2R_random 1036647 96 - 2996586 CUUUCGCCUGCUCCGCUUGCCACCGCAGGCAGUGGGGAAAUUGCACGAUGGGAGGCUGGCU--GGUGGAGGCACCACAGCCGCAGGGGG---AGGGGUCUG--- (((((.(((((...((((.(((.((...(((((......))))).)).))).)))).((((--(.(((.....))))))))))))).))---)))......--- ( -45.40, z-score = -1.20, R) >droSec1.super_1 1434296 102 - 14215200 CUUUCGCCUGCUCCGCUUGCCACCGCAGGCAGUGGGGAAAUUGCACGAUGGGAGGCUGGCU--GGUGGAGGCACCACAGCCGCAGGGAGGGGGGGGGGGGGCUG ((..(.(((.((((((((.(((.((...(((((......))))).)).))).)))).((((--(.(((.....))))))))....)))).))).)..))..... ( -49.00, z-score = -1.49, R) >droYak2.chr2L 16455274 91 - 22324452 CUUUCGCCUGCUUCGCUUUGCACCGCAGGCGGUGGGGAAAUUGCU--UUUGGAGGCUGGCU--GGUGGAGGCACCAUCGACGGAGAGGGCGGCUA--------- ...((((((.(((((((..((.(((.(((((((......))))))--).)))..)).)))(--((((....))))).....)))).))))))...--------- ( -35.50, z-score = -0.31, R) >droEre2.scaffold_4929 7811978 77 + 26641161 CUUUCGCCUGCUCCGCUUUGC-CCGCAGGCAGUGGGGAAAUUGCA--AUUGGAGGCCGGCU--GG-------------GGCGGAGAGGGCGGCUG--------- ...((((((.(((((((((((-(.((..(((((......))))).--.......)).))).--))-------------))))))).))))))...--------- ( -36.00, z-score = -0.86, R) >droAna3.scaffold_13266 16120795 87 - 19884421 CUUUCGCUCGCUCUCCUUCGAUUUGU--GCAGUGGGGAAAUUGCA--AUCGGAGGCUGACUCCGAUUGAGUCACCACCACUAGCACCACUA------------- ........................((--(((((((((..(((.((--(((((((.....))))))))))))..)).))))).)))).....------------- ( -31.70, z-score = -3.26, R) >consensus CUUUCGCCUGCUCCGCUUGCCACCGCAGGCAGUGGGGAAAUUGCA__AUGGGAGGCUGGCU__GGUGGAGGCACCACAGCCGGAGAGAGCGGCGG_________ ((((((((.(((((((........))..(((((......)))))......)).))).)))...((((....)))).........)))))............... (-16.17 = -17.15 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:49 2011