| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,787,697 – 3,787,790 |
| Length | 93 |
| Max. P | 0.704832 |
| Location | 3,787,697 – 3,787,790 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 83.21 |
| Shannon entropy | 0.21723 |
| G+C content | 0.61658 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -28.83 |
| Energy contribution | -29.17 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3787697 93 + 21146708 CCAUCCCAGCCAGACUCCAUGGAACGCCUUGCCGUAAAUGCAGUUGGGUGCAUCAGCGGUUUGGUUUUGGGGGGGGGGGGGGGUAGGUGUGUG (((((((..((...(((((......(((..(((((..(((((......)))))..)))))..)))..)))))...))..))))).))...... ( -36.60, z-score = -0.69, R) >droSim1.chr2R_random 1020469 76 + 2996586 CCAUCCGAGCCAGACUCCAUGGAACGCCUGGCCGUAAAUGCAGUUGGGUGCAUCAGCGGUUGGGUUUCGGGGGGUG----------------- ((..((((((((.......)))...(((..(((((..(((((......)))))..)))))..))))))))..))..----------------- ( -31.80, z-score = -1.50, R) >droSec1.super_1 1424253 76 + 14215200 CCAUCCGAGCCAGACUCCAUGGAACGCCUGGCCGUAAAUGCAGUUGGGUGCAUCAGCGGUUGGGUUUCGGGGGGUG----------------- ((..((((((((.......)))...(((..(((((..(((((......)))))..)))))..))))))))..))..----------------- ( -31.80, z-score = -1.50, R) >consensus CCAUCCGAGCCAGACUCCAUGGAACGCCUGGCCGUAAAUGCAGUUGGGUGCAUCAGCGGUUGGGUUUCGGGGGGUG_________________ ((..((((((((.......)))...(((..(((((..(((((......)))))..)))))..))))))))..))................... (-28.83 = -29.17 + 0.33)
| Location | 3,787,697 – 3,787,790 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 83.21 |
| Shannon entropy | 0.21723 |
| G+C content | 0.61658 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -22.77 |
| Energy contribution | -23.43 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3787697 93 - 21146708 CACACACCUACCCCCCCCCCCCCCCAAAACCAAACCGCUGAUGCACCCAACUGCAUUUACGGCAAGGCGUUCCAUGGAGUCUGGCUGGGAUGG ..............((..(((..(((...(((..(((..((((((......))))))..)))...((....)).)))....)))..)))..)) ( -21.80, z-score = 0.61, R) >droSim1.chr2R_random 1020469 76 - 2996586 -----------------CACCCCCCGAAACCCAACCGCUGAUGCACCCAACUGCAUUUACGGCCAGGCGUUCCAUGGAGUCUGGCUCGGAUGG -----------------..((..((((........((..((((((......))))))..))(((((((..((....)))))))))))))..)) ( -26.90, z-score = -2.13, R) >droSec1.super_1 1424253 76 - 14215200 -----------------CACCCCCCGAAACCCAACCGCUGAUGCACCCAACUGCAUUUACGGCCAGGCGUUCCAUGGAGUCUGGCUCGGAUGG -----------------..((..((((........((..((((((......))))))..))(((((((..((....)))))))))))))..)) ( -26.90, z-score = -2.13, R) >consensus _________________CACCCCCCGAAACCCAACCGCUGAUGCACCCAACUGCAUUUACGGCCAGGCGUUCCAUGGAGUCUGGCUCGGAUGG ...................((..((((........((..((((((......))))))..))(((((((..((....)))))))))))))..)) (-22.77 = -23.43 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:46 2011