| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,787,504 – 3,787,602 |
| Length | 98 |
| Max. P | 0.938011 |
| Location | 3,787,504 – 3,787,602 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 61.32 |
| Shannon entropy | 0.66895 |
| G+C content | 0.47985 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -8.88 |
| Energy contribution | -9.88 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3787504 98 - 21146708 AUAGGUUC-CGCAUUAUCGACUGAACGCUGUCCAGACUGCUGUUUCUGCGGUUUAAGUUUUAGUCGUUUUAGUCGCCGGUGCGGCAA--UCAGCAGUUUUC--------------- ...(((((-((((((..(((((((((((((...(((((((.......)))))))......))).)).))))))))..))))))).))--))..........--------------- ( -33.80, z-score = -3.39, R) >droSim1.chr2R_random 1020292 82 - 2996586 AUGGGUUC-CGCGUUAUC----------------GACUGCUAUUUCUGCGGUUUCAGCUUCAGUCGUUUUAGUCGCCGGUGCGGCAA--UCAGCAGUUUUC--------------- ...(((((-((((((..(----------------(((((..((..(((.(((....))).)))..))..))))))..))))))).))--))..........--------------- ( -23.40, z-score = -1.53, R) >droSec1.super_1 1424076 82 - 14215200 AUGGGUUC-CGCGUUAUC----------------GACUGCUAUUUCUGCGGUUUCAGCUUCAGUCGUUUUAGUCGCCGGUGCGGCAA--UCAGCAGUUUUC--------------- ...(((((-((((((..(----------------(((((..((..(((.(((....))).)))..))..))))))..))))))).))--))..........--------------- ( -23.40, z-score = -1.53, R) >droYak2.chr2L 16444528 89 - 22324452 AUAGGUUC-CGCGUUAUCGACAAAGAGCUGUCCAGACUGCAGUUUCUGCGGUUU---------CGGUUUUAGUCGCUGGUGCGGUAA--UCAGCAGUUUUG--------------- ...(((((-((((..(.((((..(((((((...(((((((((...)))))))))---------))))))).)))).)..))))).))--))..........--------------- ( -33.00, z-score = -3.59, R) >droEre2.scaffold_4929 7801243 95 + 26641161 AUAGGUUC-CGCGUUAUCGACAAAGAGCUGUCCAGACUGCUGUUUCUGCGGUUUCAGUUU---CAGUUUCAGUCGCUAGUGCGGCAA--UCAGCAGUUUUC--------------- ...(((((-(((((((.((((...((((((...(((((((.......)))))))......---))))))..)))).)))))))).))--))..........--------------- ( -30.10, z-score = -2.78, R) >droVir3.scaffold_12823 1314447 116 + 2474545 GCAGGUUCACAUAUUUUUCUCACAUUCCCAGCCAAAGAGCUCGCAACAAGUUGCCAACUUUCUUUUGCUUGAGUUCGAGUUCUACAACUUUAUUCGCUUUGUGCUUAGAAUUAGUU ((..((((...........................(((((((((((....)))).(((((..........))))).)))))))............((.....))...))))..)). ( -19.30, z-score = 0.30, R) >consensus AUAGGUUC_CGCGUUAUCGACA_A__GCUGUCCAGACUGCUGUUUCUGCGGUUUCAGCUU_AGUCGUUUUAGUCGCCGGUGCGGCAA__UCAGCAGUUUUC_______________ ..........((......................((((((.......))))))..................(((((....))))).......))...................... ( -8.88 = -9.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:44 2011