| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,786,340 – 3,786,396 |
| Length | 56 |
| Max. P | 0.835098 |
| Location | 3,786,340 – 3,786,396 |
|---|---|
| Length | 56 |
| Sequences | 8 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 85.94 |
| Shannon entropy | 0.26684 |
| G+C content | 0.39924 |
| Mean single sequence MFE | -11.04 |
| Consensus MFE | -8.55 |
| Energy contribution | -8.22 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3786340 56 - 21146708 AAACAAUCGACUGUUGAAGUGAC---CGCCACUUGAGUUAUGAAUAUGUGAAUAAAAAU .((((......)))).(((((..---...)))))......................... ( -4.60, z-score = 0.20, R) >droSim1.chr2R_random 1019135 56 - 2996586 AAACAAUCGACUGCUGAAGUGAC---CGCCACUUGAGUUAUGGAAAUGCGAAUAAAAAU ......((.(..(((.(((((..---...))))).)))..).))............... ( -10.50, z-score = -2.27, R) >droSec1.super_1 1422891 56 - 14215200 AAACAAUCGACUGCUGAAGUGAC---CGCCACUUGAGUUAUGGAAAUGCGAAUAAAAAU ......((.(..(((.(((((..---...))))).)))..).))............... ( -10.50, z-score = -2.27, R) >droYak2.chr2L 16443346 56 - 22324452 AAAAAAUCGACUGCUGAAGUGAC---CGCCACUUGAGUUAUGGAAAUGCGAAUAUAAAU ......((.(..(((.(((((..---...))))).)))..).))............... ( -10.50, z-score = -2.56, R) >droEre2.scaffold_4929 7800053 55 + 26641161 AAACAAUCGACUGCUGAAGUGAC---CGCCACUUGAGUUAUGGAAAUGCGAA-AAAAAU ......((.(..(((.(((((..---...))))).)))..).))........-...... ( -10.50, z-score = -2.21, R) >droAna3.scaffold_13266 16110211 56 - 19884421 AAACAAUCGAGUGCUGAAGUGGG---GGCCACUCGAGUUAUGGAAAUGCGAAUAAUAAG ......(((((((((........---)).)))))))(((((..........)))))... ( -10.70, z-score = -0.82, R) >dp4.chr3 6364211 59 + 19779522 AAACAAUUGAGUGCUCGAGUGGCCCGCAGCACUCGAGUUAUGGAAAUGUGAAUAAAAAU ..(((.((..(((((((((((........)))))))).)))..)).))).......... ( -15.50, z-score = -2.32, R) >droPer1.super_2 8207595 59 - 9036312 AAACAAUUGAGUGCUCGAGUGGCCCGCAGCACUCGAGUUAUGGAAAUGUGAAUAAAAAU ..(((.((..(((((((((((........)))))))).)))..)).))).......... ( -15.50, z-score = -2.32, R) >consensus AAACAAUCGACUGCUGAAGUGAC___CGCCACUUGAGUUAUGGAAAUGCGAAUAAAAAU ......((.(..(((.(((((........))))).)))..).))............... ( -8.55 = -8.22 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:44 2011