| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,774,909 – 3,775,023 |
| Length | 114 |
| Max. P | 0.745411 |
| Location | 3,774,909 – 3,775,023 |
|---|---|
| Length | 114 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.58 |
| Shannon entropy | 0.46820 |
| G+C content | 0.38678 |
| Mean single sequence MFE | -28.72 |
| Consensus MFE | -12.58 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3774909 114 + 21146708 AUUUUUAGCAGAAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC-GUUCAGUUAUGUAUGUCCUGGCAUUGGC .......((....(----((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).(.(((.(((.(-((......)))...)))))).)....)) ( -29.70, z-score = -1.79, R) >droSim1.chr2R 2473170 114 + 19596830 AUUUUUAGCAGUAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC-GUUCGGUUAUGUAUGUCCUGGCAUUGGC ........((((.(----((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).(.(((.(((.(-((......)))...)))))).))))).. ( -30.50, z-score = -1.95, R) >droSec1.super_1 1411514 114 + 14215200 AUUUUUAGCAGAAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC-GUUCGAUUAUGUAUGUCCUGGCAUUGGC .......((....(----((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).(.(((.(((.(-((......)))...)))))).)....)) ( -29.70, z-score = -1.66, R) >droYak2.chr2L 16432298 106 + 22324452 AUUUUUAGCAGUAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC-GUUCGGUUAUGC----CCUGGCUU---- ......(((....(----((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).((((.(((...-..)))....)))----)...))).---- ( -30.90, z-score = -2.71, R) >droEre2.scaffold_4929 7788633 106 - 26641161 AUUUUUAGCAGUAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC-GUUCGGUUAUGC----CCUGGCUU---- ......(((....(----((((((..(((((((.(((((....((((.....))))))))))))))))...))))))).((((.(((...-..)))....)))----)...))).---- ( -30.90, z-score = -2.71, R) >droAna3.scaffold_13266 16098006 107 + 19884421 AUUUUUAGCAGUAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAACGAUUCCGUUUGGUUAUGU----CCUGGCUU---- ......(((....(----((((((..(((((((.(((((....((((.....))))))))))))))))...)))))))(((((.(((......)))....)).----))).))).---- ( -26.80, z-score = -1.93, R) >droWil1.scaffold_180700 5495303 97 + 6630534 AUUUUUAGCAGUAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCCAUAAAUU--UGUUA----UGCAUGCUG---CCACAGCAAGAUGGUGG--------- .......(((((((----((((((..(((((.(.(((((....((((.....)))))))))).)))))..--.))))----))).)))))---)..((.(.....).)).--------- ( -27.10, z-score = -2.38, R) >droVir3.scaffold_12823 1299576 103 - 2474545 AUUUUUAGCAGCAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGCGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGCCGCCG--------CACUGAUGGGCCAGGCUGCUC---- ......((((((.(----((((((..(((((((.(((((....((.(.....).))))))))))))))...)))))))....(((.--------((....)))))...)))))).---- ( -31.30, z-score = -1.82, R) >droMoj3.scaffold_6496 738338 108 + 26866924 AUUUUUAGCAGCAGGCAGCAUAAUUUUUUAUUGAUUGGAUUUCAGCGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCACAUGGCC--------CAGUCACGCCCCACCCCCCACC--- .............(((.(((((((..(((((((.(((((....((.(.....).))))))))))))))...)))))))...((((.--------..)))).)))............--- ( -23.20, z-score = -1.14, R) >droGri2.scaffold_15245 6041908 107 + 18325388 AUUUUUAGCAGCAG----CAUAAUUUUUUAUUGAUUGGAUUUCAGUCAAAAUCACUUCCGGCGAUAAAUU--UUGCGACGCUGCCUCUUG---CCACAUGUACAUGAGCAUGUUGC--- .......(((((.(----((.(((((....(((((((.....))))))).(((.(.....).))))))))--.)))...))))).....(---(.((((((......)))))).))--- ( -27.10, z-score = -1.59, R) >consensus AUUUUUAGCAGUAG____CAUAAUUUUUUAUUGAUUGGAUUUCAGUGAAAAUCACUUCCGGCGAUAAAUUUGUUAUGCAGGCAGCGAUUC_GUUCAGUUAUGCAUG_CCUGGCUU____ ..................((((((..(((((((.(((((....((((.....))))))))))))))))...)))))).......................................... (-12.58 = -13.50 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:43 2011