| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,748,913 – 3,749,010 |
| Length | 97 |
| Max. P | 0.664960 |
| Location | 3,748,913 – 3,749,010 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 64.59 |
| Shannon entropy | 0.61585 |
| G+C content | 0.44806 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -11.18 |
| Energy contribution | -11.79 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3748913 97 + 21146708 -----CCUGGAUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAGGUCCUGUGAUGCCUGUCCAAAACAGCAG-AAGGAACACUCGUAAAAGCCCACCGAA------------- -----.(((((....))))).........((((((...(((((.....((((....(((.(((.....)))))).-.))))....)))))...))))))....------------- ( -31.00, z-score = -2.74, R) >droSim1.chr2R_random 1002086 97 + 2996586 -----CCUGGAUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAUGUCCUGUGAUGCCUGUCCAAAACAGCAG-AAGGAACACUCGCAGAAGCCCACCGAA------------- -----.(((((....))))).........((((((...(((((.....((((....(((.(((.....)))))).-.))))....)))))...))))))....------------- ( -34.10, z-score = -3.65, R) >droSec1.super_1 1395680 97 + 14215200 -----CCUGGAUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAGGUCCUGUGAUGCCUGUCCAAAACAGCAG-AAGGAACACUCGCAGAAGUCCACCGAA------------- -----.(((((....))))).........((((((...(((((.....((((....(((.(((.....)))))).-.))))....)))))...))))))....------------- ( -31.40, z-score = -2.36, R) >droYak2.chr2L 16412951 93 + 22324452 -----CCUAGUUAUUUUCAGAC-UUUCGAGUGGGC-AAUGCGAAUAGGUCCUGUGAUGGCUGUCUAAAACAGCAGUAACGCACUUG---UAAAGCUCACCAGA------------- -----.................-....((((..((-((((((.....(((....))).(((((.....))))).....)))).)))---)...))))......------------- ( -20.90, z-score = 0.47, R) >droEre2.scaffold_4929 7772576 95 - 26641161 ---CCUGUGUAUAUUUUCAGACAUUUCAAGUGGGC-AAUGCGAAAAGGUCCUGUGAUGGCUGUCUAAAACAGCAG-AGGGAAUACU---AAAGGCUCGCCAAA------------- ---(((.(((...((((.(((((..(((...((((-...........))))..)))....)))))))))..))).-))).......---...((....))...------------- ( -20.70, z-score = 0.57, R) >droAna3.scaffold_13266 16081691 111 + 19884421 CCUGUCUGGAACAGCCUAAAAUCCUUCAACAAAUC---CUUAAACAAAUAAUAUACAACAUGAC--AAACAACAUAUGAGGCUUCACUUUAGGGUUUAAGUUACAAGCUUACAAGG .((((.....))))(((.(((((((.........(---((((......................--..........))))).........)))))))((((.....))))...))) ( -11.82, z-score = 1.02, R) >consensus _____CCUGGAUAUUUUCAGACUUUUCAAGUGGGC_AAUGCGAAUAGGUCCUGUGAUGCCUGUCCAAAACAGCAG_AAGGAACACUCG_AAAAGCCCACCGAA_____________ .............................((((((.............((((....((.((((.....))))))...))))............))))))................. (-11.18 = -11.79 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:42 2011