| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,737,064 – 3,737,114 |
| Length | 50 |
| Max. P | 0.943832 |
| Location | 3,737,064 – 3,737,114 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.01837 |
| G+C content | 0.57333 |
| Mean single sequence MFE | -13.03 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3737064 50 - 21146708 UCGGGUCAGUCCUUUGGCCCAUUAUCCUUUCGCUCUCCACUAGCGCGCCA ..(((((((....)))))))..........(((.((.....)).)))... ( -13.60, z-score = -2.26, R) >droSim1.chr2R_random 982167 50 - 2996586 UCGGGUCAGUCCUUUGGCCCAUUAUCCUUUCGCUCUCCACUAGCGCGCCA ..(((((((....)))))))..........(((.((.....)).)))... ( -13.60, z-score = -2.26, R) >droSec1.super_1 1384174 50 - 14215200 UCGGGUCAGUCCUUUGGCCCAUUAUCCUUUCGCUCUCCACUAACGCGCCA ..(((((((....)))))))..........(((...........)))... ( -11.90, z-score = -2.10, R) >consensus UCGGGUCAGUCCUUUGGCCCAUUAUCCUUUCGCUCUCCACUAGCGCGCCA ..(((((((....)))))))..........(((.((.....)).)))... (-12.20 = -12.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:41 2011