| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,729,784 – 3,729,842 |
| Length | 58 |
| Max. P | 0.970843 |
| Location | 3,729,784 – 3,729,842 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 88.56 |
| Shannon entropy | 0.18298 |
| G+C content | 0.43277 |
| Mean single sequence MFE | -11.22 |
| Consensus MFE | -10.10 |
| Energy contribution | -10.36 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3729784 58 + 21146708 UUCUGUUUUGAUUGCCGUACACACCUACACAAGACCGAAAUUUCCGGCAAUCAGUUCG ....(..((((((((((((......)))........((....)).)))))))))..). ( -13.50, z-score = -2.82, R) >droSec1.super_1 1376724 56 + 14215200 UUCUGUUUUGAUUGCCGUACA--CCUACAUAAGGCCGAAUUUUCCGGCAAUCAGUUCG ....(..((((((((((....--(((.....)))..((....))))))))))))..). ( -15.70, z-score = -3.34, R) >droYak2.chr2L 16393832 55 + 22324452 UUCCGUUUUGAUUGCUUUACA--CCUACACAAG-CCAAAUUUUCCGACAAUCAGUUCA ....(..((((((((......--..........-...........).)))))))..). ( -4.63, z-score = -0.94, R) >droEre2.scaffold_4929 7753084 55 - 26641161 UUCUGUUUUGAUUGCUGCACA--CCUACACAAG-CCGAAUUUUCCGGCAAUCAGUUCG ....(..((((((((((....--..........-..........))))))))))..). ( -11.06, z-score = -1.61, R) >consensus UUCUGUUUUGAUUGCCGUACA__CCUACACAAG_CCGAAUUUUCCGGCAAUCAGUUCG ....(..((((((((((...........................))))))))))..). (-10.10 = -10.36 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:40 2011