| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,679,160 – 3,679,276 |
| Length | 116 |
| Max. P | 0.967094 |
| Location | 3,679,160 – 3,679,276 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.29 |
| Shannon entropy | 0.38599 |
| G+C content | 0.33147 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -13.62 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3679160 116 + 21146708 UUUCAAAGUGCAGCGAUAAGAGAAUA----UAUUUGUUCGUUAUCUUCGAAUUUCGAGACUGCCAGAGUUGGCAACAACAAACGUACAUACAUACAUAUGGUAUGUACAUAAAUAGAAAC ((((...(.((((((((((..(((((----....))))).))))).(((.....)))).)))))...((((....))))....((((((((.........)))))))).......)))). ( -31.40, z-score = -4.09, R) >droSim1.chr2R 2416163 113 + 19596830 UUUCAAAGUGCAGCGAUAAGAGAAUA----U--UUGUUCGUUAUCUGCGAAUUUUAAGACUGCCAGAGUUGGCAACAACAAAAGUACAUACAUACAUAUG-UAUGUACAUAAAUAGAAAC (((((((((...(((((((..((((.----.--..)))).))))).))..)))))............((((....))))....((((((((((....)))-))))))).......)))). ( -29.10, z-score = -3.80, R) >droSec1.super_1 1335548 113 + 14215200 UUUCAAAGUGCAGCGAUAAGAGAAUA----U--UUGUUCGUUAUCUGCGAAUUUUAAGACUGCCAGAGUUGGCAACAACAAAAGUAUAUACAUACAUAUG-UAUGUACAUAAAUAGAAAC (((((((((...(((((((..((((.----.--..)))).))))).))..)))))............((((....))))....((((((((((....)))-))))))).......)))). ( -27.20, z-score = -3.21, R) >droYak2.chr2L 16351571 94 + 22324452 UUUCAAAGUGCAGCGAUAAGAAAAUA----UGUAUGUUUGUUAUCUGUGAAUUG-CAGACUCCCAGAAUUGGCAACAACAUAUGUACAUAAAUAGAAAC--------------------- ........................((----(((((((.((((.(((((.....)-))))...........(....))))).))))))))).........--------------------- ( -16.20, z-score = -0.40, R) >droEre2.scaffold_4929 7711692 98 - 26641161 GUUCCAAGUUCAGCGAUAAGAAAAUAAUACUAUCUGUUUGUUAUCUGCGAAUUA-AAGACUCCCAGAACUGGCAACAACAUAAGUACAUAAAUAGAAAC--------------------- ((((((.((((.(((((((..(((((........))))).))))).))......-..(.....).))))))).))).......................--------------------- ( -14.10, z-score = -0.70, R) >consensus UUUCAAAGUGCAGCGAUAAGAGAAUA____U_UUUGUUCGUUAUCUGCGAAUUU_AAGACUGCCAGAGUUGGCAACAACAAAAGUACAUACAUACAUAUG_UAUGUACAUAAAUAGAAAC .......((((.(((((((..(((((........))))).))))).))...................((((....))))....))))................................. (-13.62 = -13.82 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:32 2011