| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,663,591 – 3,663,641 |
| Length | 50 |
| Max. P | 0.771565 |
| Location | 3,663,591 – 3,663,641 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 85.80 |
| Shannon entropy | 0.23151 |
| G+C content | 0.44421 |
| Mean single sequence MFE | -14.32 |
| Consensus MFE | -8.10 |
| Energy contribution | -9.50 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3663591 50 - 21146708 CCAGGACGUGGGCAACCAAAUGUUGCGAUUAAA-------CGAUCGUGACAGAUCAU ........(((....)))..(((..(((((...-------.)))))..)))...... ( -15.90, z-score = -2.65, R) >droSim1.chr2R 2397571 50 - 19596830 CCAGGACGUGGGCAACCAAAUGUUGCGAUUAAA-------CGAUCGUGACAGAUCAU ........(((....)))..(((..(((((...-------.)))))..)))...... ( -15.90, z-score = -2.65, R) >droSec1.super_1 1318305 50 - 14215200 CCAGGACGUGGGCAACCAAAUGUUGCGAUUAAA-------CGAUCGUGACAGAUUAU ........(((....)))..(((..(((((...-------.)))))..)))...... ( -15.90, z-score = -3.11, R) >droYak2.chr2L 16334523 50 - 22324452 GCAGGAAUUAGGAAACCAAAUAUUGCGAUAAAA-------CGAUCGUGACAGAUCAU ((((......(....)......)))).......-------.((((......)))).. ( -10.00, z-score = -2.53, R) >droEre2.scaffold_4929 7695334 57 + 26641161 GCAGGAAGUUCGCAACCAAAUAUUGCGAUAAAACAGAUUGCGAUCGUGACAGAUCAU ((((...((((((((.......))))))....))...))))((((......)))).. ( -13.90, z-score = -2.23, R) >consensus CCAGGACGUGGGCAACCAAAUGUUGCGAUUAAA_______CGAUCGUGACAGAUCAU ........(((....)))..(((..(((((...........)))))..)))...... ( -8.10 = -9.50 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:31 2011