| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,661,640 – 3,661,731 |
| Length | 91 |
| Max. P | 0.847560 |
| Location | 3,661,640 – 3,661,731 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 97.36 |
| Shannon entropy | 0.04760 |
| G+C content | 0.54066 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -26.22 |
| Energy contribution | -26.22 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3661640 91 - 21146708 AGGGAAGACAAUGGACCCUGUAAUUAGGGAGACACCCGAUAAUGCUACGGGAAUAAUGGCUGGCGCCUGCGAAAUCAGAGGCGACGGCAAU ...............(((((....))))).....((((.........)))).......((((.(((((.(.......)))))).))))... ( -26.40, z-score = -1.47, R) >droSim1.chr2R 2395608 91 - 19596830 AGGGAAGACAAUGGACCCUGUAAUUAGGGAGACACCCGAUAAUGCCACGGGAAUAAUGGCUGGCGCCUGCGAAAUCAGAGGCGACGGCAAU ...............(((((....))))).....((((.........)))).......((((.(((((.(.......)))))).))))... ( -26.40, z-score = -1.11, R) >droSec1.super_1 1316398 91 - 14215200 AGGGAAGACAAUGGACCCUGUAAUUAGGGAGACACCCGAUAAUGCCACGGGAAUAAUGGCUGGCGCCUGCGAAAUCAGAGGCGACGGCAAU ...............(((((....))))).....((((.........)))).......((((.(((((.(.......)))))).))))... ( -26.40, z-score = -1.11, R) >droYak2.chr2L 16332882 91 - 22324452 AGGGACGACAAUGGACCCUGUAAUUAGGGAGACACCCGAUAAUGACACGGGAAUAAUGGCUGGCGCCUGCGAAAUCAGAGGCGACGGCAAU ...............(((((....))))).....((((.........)))).......((((.(((((.(.......)))))).))))... ( -26.40, z-score = -1.72, R) >droEre2.scaffold_4929 7693651 91 + 26641161 ACGGAAGACAAUGGACCCUGUAAUUAGGGAGACACCCGAUAAUGCCACGGGAAUAAUGGCUGGCGCCUGCGAAAUCAGAGGCGACGGCCAG .(....)........(((((....))))).....((((.........)))).....((((((.(((((.(.......)))))).)))))). ( -31.90, z-score = -2.79, R) >consensus AGGGAAGACAAUGGACCCUGUAAUUAGGGAGACACCCGAUAAUGCCACGGGAAUAAUGGCUGGCGCCUGCGAAAUCAGAGGCGACGGCAAU ...............(((((....))))).....((((.........)))).......((((.(((((.(.......)))))).))))... (-26.22 = -26.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:29 2011