| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,300,870 – 2,300,960 |
| Length | 90 |
| Max. P | 0.574845 |
| Location | 2,300,870 – 2,300,960 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.19 |
| Shannon entropy | 0.52268 |
| G+C content | 0.36567 |
| Mean single sequence MFE | -19.09 |
| Consensus MFE | -7.15 |
| Energy contribution | -7.83 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2300870 90 - 23011544 UGCACUUACUUUUCGGUUUU---UCCAUUUUAACUCUC-----UUUUUUUUUUGGCUUGGCCAUUGACGUGGCCGUUGAGUUGAGUGAUUGCAAUAAA ((((.((((((..(((....---.))............-----........(..((..((((((....))))))))..))..)))))).))))..... ( -23.40, z-score = -2.77, R) >droEre2.scaffold_4929 2334527 86 - 26641161 UGCACUUA-UUUUCGGUUUU---UCCAUUUUAACUCU--------UAUUUUUUGCCUUGGCCAUUGACGUGGCCAUUGAGUUGAGUGAUUGCAAUAAA ((((.(((-(....((....---.))...(((((((.--------............(((((((....)))))))..))))))))))).))))..... ( -21.66, z-score = -2.67, R) >droYak2.chr2L 2279175 95 - 22324452 UGCACUUUUUUUUCGGUUUU---UGCAUUUUUCCAUUUUAUAUCUUAUUUUCUGCCUUGGCCAUUGACGUGGCCGUUGAGUUGAGUGAUUGCAAUAAA ((((..........((....---.........))..........((((((....(..(((((((....)))))))..)....)))))).))))..... ( -16.52, z-score = -0.15, R) >droSec1.super_5 471711 89 - 5866729 UGCACUUACUUUUCGGUUUU---UCCAUUUUAACUCUC------UUAUUUUUCGCCUUGGCCAUUGACGUGGCCGUUGAGUUGAGUGAUUGCAAUAAA ((((.((((.....((....---.))...(((((((..------.............(((((((....)))))))..))))))))))).))))..... ( -23.13, z-score = -2.90, R) >droSim1.chr2L 2258091 89 - 22036055 UGCACUUACUUUUCGGUUUU---UCCAUUUUAACUCUC------UUAUUUUUUGCCUUGGCCAUCGACGUGGCCGUUGAGUUGAGUGAUUGCAAUAAA ((((.((((.....((....---.))...(((((((..------.............(((((((....)))))))..))))))))))).))))..... ( -23.13, z-score = -2.90, R) >droAna3.scaffold_12916 10017962 94 + 16180835 UCAAUUUAUUUUUCUGUUUUCUCUCCGUUUAUAUACACU----UUUUUUUUCAGUCCUUACCAUUGACGUGGCCGUUGAGUUGAGUGAUUGCAAUAAA .......................................----........(((((((((...(..(((....)))..)..)))).)))))....... ( -11.20, z-score = 0.13, R) >droWil1.scaffold_180708 2265028 72 - 12563649 -------------------------CAUUUAUUUUUUAAACA-UGACAUUUCCGUUGUCGCCUUCGAUCCUACUAUUGGGUUGAGUGAUUGCAAUAAA -------------------------.................-..........((.(((((..(((((((.......)))))))))))).))...... ( -14.60, z-score = -1.87, R) >consensus UGCACUUACUUUUCGGUUUU___UCCAUUUUAACUCUC______UUAUUUUUUGCCUUGGCCAUUGACGUGGCCGUUGAGUUGAGUGAUUGCAAUAAA ..........................................................((((((....))))))((((((((....)))).))))... ( -7.15 = -7.83 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:48 2011