| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,653,940 – 3,654,033 |
| Length | 93 |
| Max. P | 0.641851 |
| Location | 3,653,940 – 3,654,033 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.12 |
| Shannon entropy | 0.53787 |
| G+C content | 0.55780 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -16.06 |
| Energy contribution | -16.45 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3653940 93 - 21146708 ---------GGGUAUCCAUGAAUGAAUGACGCAGUUUCUGGCGUCUGCUAGAAGGUUCUACUGUCUCGUUUCCACU---A-CCCCCAACGCUCCUCGCCGCUCCUU---------- ---------(((((....((...((((((.((((((((((((....)))))))......))))).)))))).)).)---)-))).....((........)).....---------- ( -22.20, z-score = -0.66, R) >droEre2.scaffold_4929 7686331 102 + 26641161 ---------GGGUAUCCAUGAAUGAAUGACGCAGUUUCUGGCGUCUGCUAGAAGGUUCUACUGUCUCGUUUCCAUUCCAUUGCCCCUCGACUCCCCGCCGGAGCUCUCCUU----- ---------(((((.....((((((((((.((((((((((((....)))))))......))))).)))))..)))))...)))))...((((((.....)))).)).....----- ( -31.50, z-score = -2.15, R) >droYak2.chr2L 16325388 105 - 22324452 ---------GGGUAUCCAUGAAUGAAUGACGCAGUUUCUGGCGUCUGCUAGAAGGUUCUACUGUCUCGUUCCCGCCCGAAUGCCCCACGA--CCCCGCCGAAACUCUCCUCUCCUU ---------((((((.(..(...((((((.((((((((((((....)))))))......))))).))))))...)..).)))))).....--........................ ( -26.00, z-score = -0.89, R) >droSec1.super_1 1308860 94 - 14215200 ---------GGGUAUCCAUGAAUGAAUGACGCAGUUUCUGGCGUCUGCUAGUAGGUUCUACUGUCUCGUUCCCACC---ACCCCCCAACGCCCCUCGCCGCUCCUA---------- ---------((((......((((((..(((((........)))))...((((((...))))))..)))))).....---))))......((........)).....---------- ( -20.90, z-score = -0.10, R) >droSim1.chr2R_random 936460 94 - 2996586 ---------GGGUAUCCAUGAAUGAAUGACGCAGUUUCUGGCGUCUGCUAGAAGGUUCUACUGUUUCGUUCCCACC---ACCCCCCAACGCCCCUCGCCGCUCCUU---------- ---------(((......((...((((((.((((((((((((....)))))))......))))).)))))).))..---....)))...((........)).....---------- ( -22.20, z-score = -0.60, R) >droWil1.scaffold_180700 1089481 86 - 6630534 UGCGGCCGGGUCUACCCAUGAAUGAAUGACGCAAAUUUU-GUGUGUACCCAGCCGGGCUCCU-UCUCGUUAGCUCU-----GUCGCGUCGGUC----------------------- .(((((.(((((....(((......)))(((((.....)-))))).)))).)))(((((...-.......))))).-----...)).......----------------------- ( -23.00, z-score = 0.65, R) >consensus _________GGGUAUCCAUGAAUGAAUGACGCAGUUUCUGGCGUCUGCUAGAAGGUUCUACUGUCUCGUUCCCACC___A_CCCCCAACGCUCCUCGCCGCUCCUC__________ .........(((...........((((((.((((((((((((....)))))))......))))).))))))............))).............................. (-16.06 = -16.45 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:28 2011