| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,651,097 – 3,651,217 |
| Length | 120 |
| Max. P | 0.681000 |
| Location | 3,651,097 – 3,651,217 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.48 |
| Shannon entropy | 0.41226 |
| G+C content | 0.37539 |
| Mean single sequence MFE | -26.61 |
| Consensus MFE | -15.10 |
| Energy contribution | -14.66 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3651097 120 - 21146708 UAGUUGCUUUCUGGCAGUCGUAUUCGGUUUCAUACGAAUAUUUCGAGUGUAUCUUACUUUUGGAACACAAUUAUAAUUUUCCGAGGGAAGUAAGCCAACGAAAGCGGGAGAGAUUUAGCC ..((((((((((.((..(((((((((........))))).....(.((....(((.(((((((((.............))))))))))))...))).))))..)).))))))...)))). ( -30.32, z-score = -1.42, R) >droSim1.chr2R_random 933536 120 - 2996586 UAUUUUCUUACUUGCAAUCAUAUUCGAUUUCAUACGAAUAUUUCGAGUGUACUUUACUUUUGGAACACAAUUAUAAUUUUCCGAGGGAAGUAAGCCAACGAAAGCGGGAGAGAUUUAGCC .....((((.(((((.....((((((........))))))(((((.((.(((((..(((((((((.............)))))))))))))).))...)))))))))).))))....... ( -28.12, z-score = -2.61, R) >droSec1.super_1 1305988 114 - 14215200 UAUUUGCUUACUUGCAAUCAUAUUCGAUUUCAAGCGAAUAUUUCGAGUGUACUUUACUUUUGGAACACAAUUAUAAUUUUCCGAGGGAAGUAAGCCAACGAAAGCGGGAGAGCC------ .....((((.(((((.....((((((........))))))(((((.((.(((((..(((((((((.............)))))))))))))).))...)))))))))).)))).------ ( -29.82, z-score = -2.86, R) >droYak2.chr2L 16322590 119 - 22324452 -UUUUGUCUUUUCUUCCUCGUAUUUUAUUCAAAACGGAUGUUUCAAGUGUACCCCAAUUUUGGAACACAAUUAUAAUGUUUCAUGGGAAGUAAGCCAACGAAAGCGGGCGAGAUUUAACC -....(((((..(((((.(((....(((((.....)))))......((((.((........)).))))..............))))))))...(((..(....)..))))))))...... ( -25.70, z-score = -0.83, R) >droEre2.scaffold_4929 7683690 100 + 26641161 -------------------GUAUUUGAUUCCCAAUGAAUAUUUCAAGUGUACCUUACUUUUGGAAC-CAAUUAUAAUUUUCCAUGGGAAGUAAGCCAACGAACGCGGGAGAGAUUUAGCC -------------------........(((((..(((.....))).((((.((((((((((((((.-...........)))))...)))))))).....).))))))))).......... ( -19.10, z-score = -0.37, R) >consensus UAUUUGCUUACUUGCAAUCGUAUUCGAUUUCAAACGAAUAUUUCGAGUGUACCUUACUUUUGGAACACAAUUAUAAUUUUCCGAGGGAAGUAAGCCAACGAAAGCGGGAGAGAUUUAGCC ....................((((((........))))))((((..((((.((........)).)))).......((((((....))))))...((..(....)..)).))))....... (-15.10 = -14.66 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:26 2011