| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,631,218 – 3,631,326 |
| Length | 108 |
| Max. P | 0.929966 |
| Location | 3,631,218 – 3,631,326 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 66.73 |
| Shannon entropy | 0.53874 |
| G+C content | 0.48606 |
| Mean single sequence MFE | -16.62 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3631218 108 - 21146708 UACCGCGUUUUUCCGCACACAAACACCCACCCACCCCCA-CCCGUUCAAUUCACAGUAAUGUAUA-UUAUACAUAUGUAAAGUGUGAACUCAGCCACGCGGCAGUUCUCA ..((((((.......(((((...................-.......(((..(((....)))..)-)).(((....)))..))))).........))))))......... ( -19.09, z-score = -2.12, R) >droSim1.chr2R 2362001 93 - 19596830 ---------------UAC-CGAGUUUUUCCGC-CCCCCACCCCCUUCAUUUGACAUAGAUAGAUAUAUAGACAUAUGUAAAGUGUGAACUCAGCCACGCGGCAGUUCUCA ---------------...-.(((..((.((((-.............(((((.(((((..((......))....))))).))))).............)))).))..))). ( -17.07, z-score = -1.80, R) >droSec1.super_1 1286376 94 - 14215200 ---------------UAC-CGAGUUUUUUUCCGCUCCCACCCCCUUCAUUUGACAUAGAUAGAUAGAUAUACAUAUGUAAAGUGUGAACUCAGCCACGCGGCAGUUCUCA ---------------...-.((((........))))..........(((((.(((((.(((......)))...))))).))))).(((((..(((....))))))))... ( -17.60, z-score = -1.51, R) >droYak2.chr2L 16303675 84 - 22324452 ---------------UAC-CGUGUUUUUCCACCGCCCCUUCCCCUCUAUCACACAU----------UCUCAGCCAUAUAAAGUGUGAACUGAGCCACGCGGCAGUUCUCA ---------------...-.(((......))).(((.......(((..((((((..----------...............))))))...)))......)))........ ( -14.05, z-score = -1.35, R) >droEre2.scaffold_4929 7664205 84 + 26641161 ---------------UAC-CAUGUUUUUCCGCCGCCCCUCCCCUCGCGUCUUCCAU----------UCUCAGACAUGUAAAGUGUGAACUCAGCCACGCGGCAGUUCUCA ---------------...-...........(((((............((((.....----------....)))).........(((........))))))))........ ( -15.30, z-score = -1.08, R) >consensus _______________UAC_CGAGUUUUUCCCCCCCCCCACCCCCUUCAUUUCACAU__AU__AUA_UUACACAUAUGUAAAGUGUGAACUCAGCCACGCGGCAGUUCUCA ..................................................................................((.(((((..(((....)))))))).)) ( -9.00 = -9.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:20 2011