| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,629,293 – 3,629,389 |
| Length | 96 |
| Max. P | 0.567150 |
| Location | 3,629,293 – 3,629,389 |
|---|---|
| Length | 96 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.76 |
| Shannon entropy | 0.35703 |
| G+C content | 0.61330 |
| Mean single sequence MFE | -34.41 |
| Consensus MFE | -22.31 |
| Energy contribution | -21.58 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3629293 96 - 21146708 ----------------CAACA-GCGCAGCAACAGAAUGG--ACGUCUACCAGAUCGACGAUGGAUU----CCACUCGGACGGCGGCACCGAGACUCCGCCGCCGUCACCCAGUUCUGGG- ----------------.....-.(.(((.(((.((.(((--(.(((((.(........).))))))----))).)).(((((((((...........))))))))).....)))))).)- ( -33.40, z-score = -1.42, R) >droSim1.chr2R 2360110 96 - 19596830 ----------------CAGCA-GCGCAGCAACAGAAUGG--ACGUCUACCAGAUCGACGAUGGAUU----CCACUCGGACGGCGGCACCGAGACUCCGCCGCCGUCACCCAGUUCUGGG- ----------------..((.-.....))....((.(((--(.(((((.(........).))))))----))).)).(((((((((...........))))))))).((((....))))- ( -34.50, z-score = -1.35, R) >droSec1.super_1 1284559 96 - 14215200 ----------------CAACA-GCGCAGCAACAGAAUGG--ACGUCUACCAGAUCGACGAUGGAUU----CCACUCGGACGGCGGCACCGAGACUCCGCCGCCGUCACCCAGUUCUGGG- ----------------.....-.(.(((.(((.((.(((--(.(((((.(........).))))))----))).)).(((((((((...........))))))))).....)))))).)- ( -33.40, z-score = -1.42, R) >droYak2.chr2L 16301839 96 - 22324452 ----------------CAACA-GCGCAGCAACAGAAUGG--ACGUCUAUCAGAUCGACGAUGGAUU----CCACUCGGACGGCGGCACCGAGACUCCGCCGCCGUCUCCCAGUUCUGGG- ----------------.....-.(.(((.(((.((.(((--(.(((((((........))))))))----))).))((((((((((...........))))))))))....)))))).)- ( -38.30, z-score = -2.64, R) >droEre2.scaffold_4929 7662395 96 + 26641161 ----------------CAGCA-GCGCAGCAACAGAAUGG--ACGUCUAUCAGAUCGACGAUGGAUU----CCACUCGGACGGCGGCACCGAGACUCCGCCGCCGUCUCCCAGUUCUGGG- ----------------..((.-.....))....((.(((--(.(((((((........))))))))----))).))((((((((((...........))))))))))((((....))))- ( -39.00, z-score = -2.40, R) >droAna3.scaffold_13266 10135757 96 - 19884421 ----------------CAACA-GCGCAGCAACAGAAUGG--ACGUCUACCAGAUCGACGAUGGCUU----CCAUUCGGAUGGUGGCACCGAAACCCCACCACCGUCACCGAGUUCCGGC- ----------------.....-.((.(((....((((((--(.(((...............))).)----)))))).((((((((.............)))))))).....))).))..- ( -27.38, z-score = -0.48, R) >dp4.chr3 17151870 96 + 19779522 ----------------CAGCA-GCGCAGCAACAGAAUGG--ACGUCUACCAGAUCGACGAUGGAUU----CCACUCAGACGGCGGCACCGAGACACCGCCGCCGUCGCCAAGCUCGGGC- ----------------..((.-.((.(((....((.(((--(.(((((.(........).))))))----))).)).(((((((((...........))))))))).....))))).))- ( -35.10, z-score = -1.77, R) >droPer1.super_2 6222218 96 + 9036312 ----------------CAGCA-GCGCAGCAACAGAAUGG--ACGUCUACCAGAUCGACGAUGGAUU----CCACUCAGACGGCGGCACCGAGACACCGCCGCCGUCGCCCAGCUCGGGC- ----------------..((.-.....))....((.(((--(.(((((.(........).))))))----))).)).(((((((((...........)))))))))((((.....))))- ( -36.10, z-score = -1.90, R) >droWil1.scaffold_180700 1046477 96 - 6630534 ----------------CAGCA-ACGCAGCAACAGAAUGG--ACGUGUAUCAGAUCGAUGAUGGUUU----CCAUUCAGAUGGUGGCACCGAAACGCCGCCACCAUCUCCAAGUUCUGGA- ----------------.....-...(((.(((.((((((--(....(((((......)))))...)----))))))((((((((((..((...))..))))))))))....))))))..- ( -34.10, z-score = -2.63, R) >droVir3.scaffold_12875 851193 96 - 20611582 ----------------CAGCA-GCGCAACAACAGAAUGG--ACGUCUAUCAGAUCGAUGAUGGUUU----CCACUCGGAUGGCGGUACCGAGACACCGCCGCCGUCUCCCAGUUCGGGC- ----------------..((.-.((.(((....((.(((--(...((((((......))))))..)----))).))((((((((((...........))))))))))....))))).))- ( -32.50, z-score = -0.91, R) >droMoj3.scaffold_6496 3878772 96 - 26866924 ----------------CAGCA-GCGCAACAACAGAAUGG--ACGUCUAUCAGAUCGACGAUGGUUU----CCACUCGGAUGGAGGCACCGAAACGCCGCCUCCAUCGCCCAGUUCGGGC- ----------------.....-...........((.(((--(...(((((........)))))..)----))).)).(((((((((..((...))..)))))))))((((.....))))- ( -33.80, z-score = -1.80, R) >droGri2.scaffold_15245 8221828 96 + 18325388 ----------------CAGCA-GCGCAACAACAGAAUGG--ACGUUUACCAGAUUGACGACGGUUU----CCAUUCGGAUGGCGGCACCGAAACGCCGCCGCCAUCGCCCAGUUCGGGU- ----------------.....-...........((((((--(.....(((...........))).)----)))))).(((((((((..((...))..)))))))))((((.....))))- ( -32.90, z-score = -1.23, R) >anoGam1.chr2L 39488852 120 + 48795086 CGACGACGAUCUACACCAAUGCACACGCCUACCCGGUGGCUUCGUUCAACUACGCCACGAUGAGCUACGCGCACUCGGAGGGUGGCUCCGUGUCGCCGCCACCGUCGCCCCGCUCGAACA (((((.(((...........((....)).....(((((((...(((((.(........).)))))...(((.((.(((((.....))))).))))).))))))))))...)).))).... ( -36.90, z-score = 0.76, R) >consensus ________________CAGCA_GCGCAGCAACAGAAUGG__ACGUCUACCAGAUCGACGAUGGAUU____CCACUCGGACGGCGGCACCGAGACUCCGCCGCCGUCGCCCAGUUCGGGC_ .................................((((.....((((.........))))..................(((((((((...........))))))))).....))))..... (-22.31 = -21.58 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:20 2011