| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,620,726 – 3,620,819 |
| Length | 93 |
| Max. P | 0.633628 |
| Location | 3,620,726 – 3,620,819 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 72.56 |
| Shannon entropy | 0.50388 |
| G+C content | 0.53875 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -16.00 |
| Energy contribution | -17.12 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3620726 93 + 21146708 -----GAUGCCAUGCAUUAAGUAUACGCCGUGUGUGCGCCAGUCCGUGCGAGCUGCACGAGGUUGUUGGCAUUGUCCUUUGCCUUCUGAUCUCUGGCC -----(((((...)))))..((((((.....))))))(((((..(((((.....)))))((((((..((((........))))...))))))))))). ( -31.00, z-score = -0.92, R) >droSim1.chr2R 2351680 93 + 19596830 -----GAUGCCAUGCAUUAAGUAUACGCCGUGUGUGCGCCAGUCCGUGCGGGCUGCACGAGGUUGUUGGCAUUGUCCUUUGCCUUCUGAUCUCUGGCC -----...(((((((.....((((((.....))))))...(((((....)))))))).(((((((..((((........))))...))))))))))). ( -31.80, z-score = -0.58, R) >droSec1.super_1 1276153 80 + 14215200 -----GAUGCCAUGCAUUAAGUAUACGCCGUGUGUGCGC-------------CAAUCCGAGGUUGUUGGCAUUGCCCUUUGCCUUCUGAUCUCUGGCC -----(((((...)))))..((((((.....))))))((-------------((....(((((((..((((........))))...))))))))))). ( -24.10, z-score = -1.29, R) >droYak2.chr2L 16293451 77 + 22324452 -----GAUGCCAUGCAUUGAGUAUACGCCGUGUGUGCGC----------------UCCGAGGUUGUUGGCAUUGUCCUUUGCCUUCUGAUCUCUGGCC -----...((((......(((..(((((...)))))..)----------------)).(((((((..((((........))))...))))))))))). ( -25.10, z-score = -1.79, R) >droEre2.scaffold_4929 7653952 81 - 26641161 --------------GAGUAUGUAUACGCCGUGUGUGCGC---UCCGUACGGGCUGCACGAGGUUGUUGGCAUUGUCCUUUGCCUUCUGAUCUCUGGCC --------------..(((....)))(((....((((((---.((....)))).))))(((((((..((((........))))...))))))).))). ( -27.50, z-score = -1.11, R) >droWil1.scaffold_180700 1032117 95 + 6630534 ACCACCCUCACAUACGUUGCAGACUGUCACUGUGUAUGUGUGUGUGUAAG---UAUGUCAGGUUGUUGGCAUUGUCCUUUGCUUUUUGAUCUUUGGCC .(((.(((.((((((.(((((.((...(((.......))).)).))))))---))))).))).....((((........))))..........))).. ( -24.80, z-score = -0.66, R) >consensus _____GAUGCCAUGCAUUAAGUAUACGCCGUGUGUGCGC___UCCGU_CG__CUGCACGAGGUUGUUGGCAUUGUCCUUUGCCUUCUGAUCUCUGGCC ........((((........((((((.....)))))).....................(((((((..((((........))))...))))))))))). (-16.00 = -17.12 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:19 2011