| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,590,726 – 3,590,830 |
| Length | 104 |
| Max. P | 0.541334 |
| Location | 3,590,726 – 3,590,830 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.37 |
| Shannon entropy | 0.42032 |
| G+C content | 0.35458 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -10.54 |
| Energy contribution | -10.06 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3590726 104 - 21146708 UAAUAGGAAACACUAAUAA--GGAAACAAACUUUAAAAAUUAUGGACACAUUCCCGUUUUCCCCCUUUAUUUGCAGUAUUGGGCUACGAAUAUCAGCAAAGUAAGA .....((((((........--(....)................(((.....))).))))))...(((..(((((.(((((.(....).)))))..)))))..))). ( -16.80, z-score = -0.34, R) >droSim1.chr2R 2314327 101 - 19596830 UAAUAGGAAACGCUAAUAA--AGAAA-AAACUUUAAAAAUUAUGAACACAUUCCCGUUU--CCCCAUUAUUUGCAGUUUUAGGCUGCGAAUAUCAGCAAAGUGAGA .....(((((((....(((--((...-...)))))........(((....))).)))))--))....((((((((((.....)))))))))).............. ( -20.70, z-score = -2.52, R) >droSec1.super_1 1246189 80 - 14215200 UAAUAGGAAACACUAA-----------------UAAACAUUAUGGACACAUUCC---------CCUUUAUUUGCAGUUUUAGGCUGCGAAUAUCAGCAAAGUGAGA ..........((((..-----------------..........(((.....)))---------....((((((((((.....)))))))))).......))))... ( -16.40, z-score = -1.85, R) >droYak2.chr2L 16263473 104 - 22324452 UAAUGGGAAACGCAAAUAAGCGAAAACAAACUUAAAAAAUUAUGGACACAUUUCCGUGU--UCCUUUUAUUUGCAGUUUUAGGUUGCAAAUAAGAGCAUAGUGACA ..........(((......)))................(((((((((((......))))--).(((((((((((((.......))))))))))))))))))).... ( -23.80, z-score = -2.31, R) >droEre2.scaffold_4929 7624228 104 + 26641161 UAAUAGGCUACGCAAAUAAACGAGCACCAACUUUAGACAUUGUGGACACGUCCCCGUUU--CCCUUUUAUUUGCAGUUUUAGGCUGCGAAUACGAGCAAAGUGAGA ......(((.((........))))).(..(((((.........(((.(((....))).)--))(((.((((((((((.....)))))))))).))).)))))..). ( -24.70, z-score = -1.32, R) >consensus UAAUAGGAAACGCUAAUAA__GAAAACAAACUUUAAAAAUUAUGGACACAUUCCCGUUU__CCCCUUUAUUUGCAGUUUUAGGCUGCGAAUAUCAGCAAAGUGAGA ..........(((............................(((....)))................((((((((((.....))))))))))........)))... (-10.54 = -10.06 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:11 2011