| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,560,184 – 3,560,293 |
| Length | 109 |
| Max. P | 0.556451 |
| Location | 3,560,184 – 3,560,293 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Shannon entropy | 0.50222 |
| G+C content | 0.39465 |
| Mean single sequence MFE | -23.99 |
| Consensus MFE | -10.89 |
| Energy contribution | -12.05 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3560184 109 + 21146708 --------CCGAAUGUGCGAACGUAAAUAGCUAAAUUUGC-ACCCUGCAAUAUUUGACUAUUUACAGUGGCACAUUGUCUGCCCAUUCAAUU--CACUUUUACCGAUUUUGCCCUGGUGC --------...(((((((.(..((((((((.(((((((((-.....)))).))))).))))))))..).)))))))....(((((..(((.(--(.........))..)))...))).)) ( -27.70, z-score = -2.70, R) >droSim1.chr2R 2303057 109 + 19596830 --------CCGAAUGUGCGAACGUAAAUAGCUAAAUUUGC-ACCCUGCAAUAUUUGAGUAUUUACAGUGGCACAUUGUCCGCCAAUUCAAUU--CACUUUUACCGAUUUUGCCCUGGUGC --------...(((((((.(..(((((((..(((((((((-.....)))).)))))..)))))))..).)))))))...(((((...(((.(--(.........))..)))...))))). ( -26.80, z-score = -1.92, R) >droSec1.super_1 1215918 109 + 14215200 --------CCGAAUGUGCGAACGUAAAUAGCUAAAUUUGC-ACCCUGCAAUAUUUGAGUAUUUACAGUGGCACAUUGUCCGCCAAUUCAAUU--CACUUUUACCGAUUUUGCCCUGGUGC --------...(((((((.(..(((((((..(((((((((-.....)))).)))))..)))))))..).)))))))...(((((...(((.(--(.........))..)))...))))). ( -26.80, z-score = -1.92, R) >droYak2.chr2L 16231064 109 + 22324452 --------CCGAAUGUGCGAACGUAAACAGCUAAAUUUGC-ACCCUGCAAUAUUUGUGUGUUUACAGUGGCACAUUGUCCGCUUAUUUAAUU--CACUUUUACCGAUUUUACUCUGGUGC --------...(((((((.(..(((((((..(((((((((-.....)))).)))))..)))))))..).)))))))................--......((((((......)).)))). ( -25.70, z-score = -1.48, R) >droEre2.scaffold_4929 7593781 109 - 26641161 --------CCGAAUGUGCGAACGUAAAUAGCUAAAUUUGC-ACCCUGCAAUAUUUAAUUAUUUACAGUGGCACAUUGUCCGCUUAAUAAAUU--UACUUUUACCGAUUUUGCCCUGGUGC --------...(((((((.(..((((((((.(((((((((-.....)))).))))).))))))))..).)))))))................--......(((((.........))))). ( -25.00, z-score = -2.16, R) >droAna3.scaffold_13266 10068949 111 + 19884421 --------GCCAAUGUGCGAAUAUAAACAGCUAAAUUUGC-GCCCUGCAAUAUUUUAAUAUUUACUGUGGCCCAUUGUUCACUUAUUUAAUUGCCACUUUUACCAAUUUUAACCUGGUGU --------((....((((((((.((......)).))))))-))...))..................(((((..((((..........)))).)))))...(((((.........))))). ( -18.90, z-score = -0.35, R) >dp4.chr3 13224011 100 - 19779522 UGAGUGCAGUCCAUGUGGCAAUGUAAAUAUCUAAAUUUGCCGCCUUCCAGUACUUUAAUAUUGAUUUUAGCACGAUUUUCGCCUAUUCAAUC---ACUGGUGU----------------- ...((((.......(((((((..((......))...)))))))....(((((......)))))......))))......((((.........---...)))).----------------- ( -20.50, z-score = -0.88, R) >droPer1.super_2 2261321 100 - 9036312 UGAGUGCAGUCCAUGUGGCAAUGUAAAUAUCUAAAUUUGCCGCCUUCCAGUACUUUAAUAUUGAUUUUAGCACGAUUUUCGCCUAUUCAAUC---ACUGGUGU----------------- ...((((.......(((((((..((......))...)))))))....(((((......)))))......))))......((((.........---...)))).----------------- ( -20.50, z-score = -0.88, R) >consensus ________CCGAAUGUGCGAACGUAAAUAGCUAAAUUUGC_ACCCUGCAAUAUUUGAAUAUUUACAGUGGCACAUUGUCCGCCUAUUCAAUU__CACUUUUACCGAUUUUGCCCUGGUGC ...........(((((((.(..(((((((...((((((((......)))).))))...)))))))..).)))))))............................................ (-10.89 = -12.05 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:08 2011