| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,546,584 – 3,546,658 |
| Length | 74 |
| Max. P | 0.964637 |
| Location | 3,546,584 – 3,546,658 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 69.28 |
| Shannon entropy | 0.48517 |
| G+C content | 0.32676 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -11.30 |
| Energy contribution | -12.30 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964637 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3546584 74 + 21146708 -----UAAAUAGUAAGCAUUUAGUGCUUUAUAAUUACGAGCUCUGAGUUCUGCUUUCAAAAGAUACACUUUUGUAGGCG -----.........((.((((((.((((.........)))).)))))).))((((.((((((.....)))))).)))). ( -17.80, z-score = -1.84, R) >droEre2.scaffold_4929 7582598 75 - 26641161 AAUAUAUAUUAUUAACCAUUUAGAUCUUUAUGGUUUCGAG-UAUACAUCCUUCGUAUGAGUAUUAUUGGGUUCUGA--- ....((((((...((((((..(....)..))))))...))-)))).((((...(((.......))).)))).....--- ( -9.80, z-score = 0.75, R) >droSec1.super_1 1203384 74 + 14215200 -----UUAAUUAUAAACAUUUAGUGCUUUAGGAUUUCGAGCUCUGAGUUCUGCUUUCAAAAGAUACACUUUUGGAGGUG -----............((((((.((((.........)))).))))))...(((((((((((.....))))))))))). ( -17.90, z-score = -2.14, R) >droSim1.chr2R 2272572 74 + 19596830 -----UUAAUUAUAAACAUUUAGUGCUUUAGGAUUUCGAGCUCUGAGUUCUGCUUUCAAAAGAUACACUUUUGGAGGCG -----............((((((.((((.........)))).))))))...(((((((((((.....))))))))))). ( -20.10, z-score = -3.04, R) >consensus _____UUAAUAAUAAACAUUUAGUGCUUUAGGAUUUCGAGCUCUGAGUUCUGCUUUCAAAAGAUACACUUUUGGAGGCG .................((((((.((((.........)))).))))))...(((((((((((.....))))))))))). (-11.30 = -12.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:05 2011